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Protein

Probable calcium-binding protein CML34

Gene

CML34

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Potential calcium sensor.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Calcium bindingi11 – 22121Add
BLAST
Calcium bindingi47 – 58122Add
BLAST
Calcium bindingi111 – 122123PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Calcium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable calcium-binding protein CML34
Alternative name(s):
Calmodulin-like protein 2
Calmodulin-like protein 34
Gene namesi
Name:CML34
Ordered Locus Names:At3g03410
ORF Names:T21P5.17
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G03410.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 131131Probable calcium-binding protein CML34PRO_0000073660Add
BLAST

Proteomic databases

PaxDbiQ9SRP5.
PRIDEiQ9SRP5.

Expressioni

Gene expression databases

GenevisibleiQ9SRP5. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G03410.1.

Structurei

Secondary structure

1
131
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi3 – 108Combined sources
Beta strandi14 – 163Combined sources
Helixi20 – 2910Combined sources
Helixi36 – 4611Combined sources
Beta strandi49 – 546Combined sources
Helixi56 – 649Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1TIZNMR-A2-67[»]
ProteinModelPortaliQ9SRP5.
SMRiQ9SRP5. Positions 2-127.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9SRP5.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 3333EF-hand 1PROSITE-ProRule annotationAdd
BLAST
Domaini34 – 6936EF-hand 2PROSITE-ProRule annotationAdd
BLAST
Domaini62 – 9736EF-hand 3PROSITE-ProRule annotationAdd
BLAST
Domaini98 – 13134EF-hand 4PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 4 EF-hand domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0027. Eukaryota.
COG5126. LUCA.
HOGENOMiHOG000233018.
InParanoidiQ9SRP5.
KOiK13448.
OMAiEFTSCIE.
PhylomeDBiQ9SRP5.

Family and domain databases

Gene3Di1.10.238.10. 2 hits.
InterProiIPR011992. EF-hand-dom_pair.
IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
[Graphical view]
PfamiPF13499. EF-hand_7. 2 hits.
[Graphical view]
SMARTiSM00054. EFh. 4 hits.
[Graphical view]
SUPFAMiSSF47473. SSF47473. 1 hit.
PROSITEiPS00018. EF_HAND_1. 3 hits.
PS50222. EF_HAND_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SRP5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAKRVFEKF DKNKDGKLSL DEFREVALAF SPYFTQEDIV KFFEEIDVDG
60 70 80 90 100
NGELNADEFT SCIEKMLKEV FVFCDVDGDG KIPASESYVT MTSLGKKFTE
110 120 130
ETSAEKVRAA DVDGDGYLNF DEFMALVIGD I
Length:131
Mass (Da):14,732
Last modified:May 1, 2000 - v1
Checksum:iC82718702E488BE6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009895 Genomic DNA. Translation: AAF01604.1.
CP002686 Genomic DNA. Translation: AEE73941.1.
BT029360 mRNA. Translation: ABK32174.1.
RefSeqiNP_186991.1. NM_111212.1.
UniGeneiAt.49587.

Genome annotation databases

EnsemblPlantsiAT3G03410.1; AT3G03410.1; AT3G03410.
GeneIDi821262.
GrameneiAT3G03410.1; AT3G03410.1; AT3G03410.
KEGGiath:AT3G03410.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009895 Genomic DNA. Translation: AAF01604.1.
CP002686 Genomic DNA. Translation: AEE73941.1.
BT029360 mRNA. Translation: ABK32174.1.
RefSeqiNP_186991.1. NM_111212.1.
UniGeneiAt.49587.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1TIZNMR-A2-67[»]
ProteinModelPortaliQ9SRP5.
SMRiQ9SRP5. Positions 2-127.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G03410.1.

Proteomic databases

PaxDbiQ9SRP5.
PRIDEiQ9SRP5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G03410.1; AT3G03410.1; AT3G03410.
GeneIDi821262.
GrameneiAT3G03410.1; AT3G03410.1; AT3G03410.
KEGGiath:AT3G03410.

Organism-specific databases

TAIRiAT3G03410.

Phylogenomic databases

eggNOGiKOG0027. Eukaryota.
COG5126. LUCA.
HOGENOMiHOG000233018.
InParanoidiQ9SRP5.
KOiK13448.
OMAiEFTSCIE.
PhylomeDBiQ9SRP5.

Miscellaneous databases

EvolutionaryTraceiQ9SRP5.
PROiQ9SRP5.

Gene expression databases

GenevisibleiQ9SRP5. AT.

Family and domain databases

Gene3Di1.10.238.10. 2 hits.
InterProiIPR011992. EF-hand-dom_pair.
IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
[Graphical view]
PfamiPF13499. EF-hand_7. 2 hits.
[Graphical view]
SMARTiSM00054. EFh. 4 hits.
[Graphical view]
SUPFAMiSSF47473. SSF47473. 1 hit.
PROSITEiPS00018. EF_HAND_1. 3 hits.
PS50222. EF_HAND_2. 4 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Arabidopsis ORF clones."
    Bautista V.R., Kim C.J., Chen H., Quinitio C., Ecker J.R.
    Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Calmodulins and related potential calcium sensors of Arabidopsis."
    McCormack E., Braam J.
    New Phytol. 159:585-598(2003)
    Cited for: GENE FAMILY, NOMENCLATURE.
  5. "Solution structure of a calmodulin-like calcium-binding domain from Arabidopsis thaliana."
    Song J., Zhao Q., Thao S., Frederick R.O., Markley J.L.
    J. Biomol. NMR 30:451-456(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY NMR OF 2-67, CALCIUM-BINDING.

Entry informationi

Entry nameiCML34_ARATH
AccessioniPrimary (citable) accession number: Q9SRP5
Secondary accession number(s): A0JPZ0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: May 1, 2000
Last modified: February 17, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Caution

Although assigned as a calmodulin family member by Ref. 4, it only contains EF-hand domains.Curated

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.