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Q9SRH6

- HIR3_ARATH

UniProt

Q9SRH6 - HIR3_ARATH

Protein

Hypersensitive-induced response protein 3

Gene

HIR3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 77 (01 Oct 2014)
      Sequence version 1 (01 May 2000)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. defense response to fungus Source: TAIR

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Hypersensitive-induced response protein 3
    Short name:
    AtHIR3
    Gene namesi
    Name:HIR3
    Synonyms:P31
    Ordered Locus Names:At3g01290
    ORF Names:T22N4.8, T4P13.3
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3

    Organism-specific databases

    TAIRiAT3G01290.

    Subcellular locationi

    Cell membrane 5 Publications; Lipid-anchor Curated; Cytoplasmic side 5 Publications

    GO - Cellular componenti

    1. membrane Source: TAIR
    2. mitochondrion Source: TAIR
    3. plasma membrane Source: TAIR
    4. plasmodesma Source: TAIR
    5. vacuolar membrane Source: TAIR
    6. vacuole Source: TAIR

    Keywords - Cellular componenti

    Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedSequence Analysis
    Chaini2 – 285284Hypersensitive-induced response protein 3PRO_0000398598Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Lipidationi2 – 21N-myristoyl glycineSequence Analysis

    Keywords - PTMi

    Lipoprotein, Myristate

    Proteomic databases

    PaxDbiQ9SRH6.
    PRIDEiQ9SRH6.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9SRH6.

    Interactioni

    Subunit structurei

    Self-interacts and forms heteromers. Interacts with NB-LRR class of R proteins before R proteins (e.g. RPS2 or RPM1) are activated by the effectors.1 Publication

    Protein-protein interaction databases

    BioGridi6642. 1 interaction.
    IntActiQ9SRH6. 6 interactions.
    STRINGi3702.AT3G01290.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9SRH6.
    SMRiQ9SRH6. Positions 41-181.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Coiled coil

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Coiled coili113 – 13927Sequence AnalysisAdd
    BLAST
    Coiled coili165 – 18521Sequence AnalysisAdd
    BLAST

    Keywords - Domaini

    Coiled coil

    Phylogenomic databases

    eggNOGiCOG0330.
    HOGENOMiHOG000035168.
    InParanoidiQ9SRH6.
    OMAiVPWIIGS.
    PhylomeDBiQ9SRH6.

    Family and domain databases

    InterProiIPR001107. Band_7.
    IPR028512. HIR.
    IPR001972. Stomatin_fam.
    [Graphical view]
    PANTHERiPTHR10264. PTHR10264. 1 hit.
    PTHR10264:SF25. PTHR10264:SF25. 1 hit.
    PfamiPF01145. Band_7. 1 hit.
    [Graphical view]
    SMARTiSM00244. PHB. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q9SRH6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGNLFCCVLV KQSDVAVKER FGKFQKVLNP GLQFVPWVIG DYVAGTLTLR    50
    LQQLDVQCET KTKDNVFVTV VASIQYRVLA DKASDAFYRL SNPTTQIKAY 100
    VFDVIRACVP KLNLDDVFEQ KNEIAKSVEE ELDKAMTAYG YEILQTLIID 150
    IEPDQQVKRA MNEINAAARM RVAASEKAEA EKIIQIKRAE GEAESKYLSG 200
    LGIARQRQAI VDGLRDSVLG FAGNVPGTSA KDVLDMVMMT QYFDTMRDIG 250
    ATSKSSAVFI PHGPGAVSDV AAQIRNGLLQ ANNAS 285
    Length:285
    Mass (Da):31,321
    Last modified:May 1, 2000 - v1
    Checksum:i57A46F2A29CFB74C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC008261 Genomic DNA. Translation: AAF26146.1.
    AC010676 Genomic DNA. Translation: AAF03497.1.
    CP002686 Genomic DNA. Translation: AEE73633.1.
    BT024707 mRNA. Translation: ABD59045.1.
    AY084426 mRNA. Translation: AAM61000.1.
    RefSeqiNP_566135.1. NM_110995.2.
    UniGeneiAt.43760.

    Genome annotation databases

    EnsemblPlantsiAT3G01290.1; AT3G01290.1; AT3G01290.
    GeneIDi821309.
    KEGGiath:AT3G01290.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC008261 Genomic DNA. Translation: AAF26146.1 .
    AC010676 Genomic DNA. Translation: AAF03497.1 .
    CP002686 Genomic DNA. Translation: AEE73633.1 .
    BT024707 mRNA. Translation: ABD59045.1 .
    AY084426 mRNA. Translation: AAM61000.1 .
    RefSeqi NP_566135.1. NM_110995.2.
    UniGenei At.43760.

    3D structure databases

    ProteinModelPortali Q9SRH6.
    SMRi Q9SRH6. Positions 41-181.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 6642. 1 interaction.
    IntActi Q9SRH6. 6 interactions.
    STRINGi 3702.AT3G01290.1-P.

    Proteomic databases

    PaxDbi Q9SRH6.
    PRIDEi Q9SRH6.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT3G01290.1 ; AT3G01290.1 ; AT3G01290 .
    GeneIDi 821309.
    KEGGi ath:AT3G01290.

    Organism-specific databases

    TAIRi AT3G01290.

    Phylogenomic databases

    eggNOGi COG0330.
    HOGENOMi HOG000035168.
    InParanoidi Q9SRH6.
    OMAi VPWIIGS.
    PhylomeDBi Q9SRH6.

    Gene expression databases

    Genevestigatori Q9SRH6.

    Family and domain databases

    InterProi IPR001107. Band_7.
    IPR028512. HIR.
    IPR001972. Stomatin_fam.
    [Graphical view ]
    PANTHERi PTHR10264. PTHR10264. 1 hit.
    PTHR10264:SF25. PTHR10264:SF25. 1 hit.
    Pfami PF01145. Band_7. 1 hit.
    [Graphical view ]
    SMARTi SM00244. PHB. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
      Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
      , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Arabidopsis ORF clones."
      Shinn P., Chen H., Kim C.J., Ecker J.R.
      Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    4. "Full-length cDNA from Arabidopsis thaliana."
      Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
      Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    5. "Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome."
      Marmagne A., Rouet M.-A., Ferro M., Rolland N., Alcon C., Joyard J., Garin J., Barbier-Brygoo H., Ephritikhine G.
      Mol. Cell. Proteomics 3:675-691(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION BY MASS SPECTROMETRY, SUBCELLULAR LOCATION.
    6. "Arabidopsis plasma membrane proteomics identifies components of transport, signal transduction and membrane trafficking."
      Alexandersson E., Saalbach G., Larsson C., Kjellbom P.
      Plant Cell Physiol. 45:1543-1556(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
      Strain: cv. Columbia.
      Tissue: Leaf and Petiole.
    7. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    8. "A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome."
      Marmagne A., Ferro M., Meinnel T., Bruley C., Kuhn L., Garin J., Barbier-Brygoo H., Ephritikhine G.
      Mol. Cell. Proteomics 6:1980-1996(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    9. "New classes of proteins forming complexes with resistance proteins."
      Qi Y., Katagiri F.
      (In) Proceedings of the 20th international conference on Arabidopsis research, abstract#501734213, Edinburgh (2009)
      Cited for: INTERACTION WITH RESISTANCE PROTEINS, SUBUNIT, SUBCELLULAR LOCATION.

    Entry informationi

    Entry nameiHIR3_ARATH
    AccessioniPrimary (citable) accession number: Q9SRH6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 5, 2010
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 77 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names

    External Data

    Dasty 3