Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Hypersensitive-induced response protein 3

Gene

HIR3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  1. defense response to fungus Source: TAIR
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Hypersensitive-induced response protein 3
Short name:
AtHIR3
Gene namesi
Name:HIR3
Synonyms:P31
Ordered Locus Names:At3g01290
ORF Names:T22N4.8, T4P13.3
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 3

Organism-specific databases

TAIRiAT3G01290.

Subcellular locationi

Cell membrane 5 Publications; Lipid-anchor Curated; Cytoplasmic side 5 Publications

GO - Cellular componenti

  1. membrane Source: TAIR
  2. mitochondrion Source: TAIR
  3. plasma membrane Source: TAIR
  4. plasmodesma Source: TAIR
  5. vacuolar membrane Source: TAIR
  6. vacuole Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedSequence Analysis
Chaini2 – 285284Hypersensitive-induced response protein 3PRO_0000398598Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Lipidationi2 – 21N-myristoyl glycineSequence Analysis

Keywords - PTMi

Lipoprotein, Myristate

Proteomic databases

PaxDbiQ9SRH6.
PRIDEiQ9SRH6.

Expressioni

Gene expression databases

GenevestigatoriQ9SRH6.

Interactioni

Subunit structurei

Self-interacts and forms heteromers. Interacts with NB-LRR class of R proteins before R proteins (e.g. RPS2 or RPM1) are activated by the effectors.1 Publication

Protein-protein interaction databases

BioGridi6642. 1 interaction.
IntActiQ9SRH6. 6 interactions.
STRINGi3702.AT3G01290.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ9SRH6.
SMRiQ9SRH6. Positions 41-181.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili113 – 13927Sequence AnalysisAdd
BLAST
Coiled coili165 – 18521Sequence AnalysisAdd
BLAST

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiCOG0330.
HOGENOMiHOG000035168.
InParanoidiQ9SRH6.
OMAiAYGYEIL.
PhylomeDBiQ9SRH6.

Family and domain databases

InterProiIPR001107. Band_7.
IPR028512. HIR.
IPR001972. Stomatin_fam.
[Graphical view]
PANTHERiPTHR10264. PTHR10264. 1 hit.
PTHR10264:SF25. PTHR10264:SF25. 1 hit.
PfamiPF01145. Band_7. 1 hit.
[Graphical view]
SMARTiSM00244. PHB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SRH6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGNLFCCVLV KQSDVAVKER FGKFQKVLNP GLQFVPWVIG DYVAGTLTLR
60 70 80 90 100
LQQLDVQCET KTKDNVFVTV VASIQYRVLA DKASDAFYRL SNPTTQIKAY
110 120 130 140 150
VFDVIRACVP KLNLDDVFEQ KNEIAKSVEE ELDKAMTAYG YEILQTLIID
160 170 180 190 200
IEPDQQVKRA MNEINAAARM RVAASEKAEA EKIIQIKRAE GEAESKYLSG
210 220 230 240 250
LGIARQRQAI VDGLRDSVLG FAGNVPGTSA KDVLDMVMMT QYFDTMRDIG
260 270 280
ATSKSSAVFI PHGPGAVSDV AAQIRNGLLQ ANNAS
Length:285
Mass (Da):31,321
Last modified:May 1, 2000 - v1
Checksum:i57A46F2A29CFB74C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC008261 Genomic DNA. Translation: AAF26146.1.
AC010676 Genomic DNA. Translation: AAF03497.1.
CP002686 Genomic DNA. Translation: AEE73633.1.
BT024707 mRNA. Translation: ABD59045.1.
AY084426 mRNA. Translation: AAM61000.1.
RefSeqiNP_566135.1. NM_110995.2.
UniGeneiAt.43760.

Genome annotation databases

EnsemblPlantsiAT3G01290.1; AT3G01290.1; AT3G01290.
GeneIDi821309.
KEGGiath:AT3G01290.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC008261 Genomic DNA. Translation: AAF26146.1.
AC010676 Genomic DNA. Translation: AAF03497.1.
CP002686 Genomic DNA. Translation: AEE73633.1.
BT024707 mRNA. Translation: ABD59045.1.
AY084426 mRNA. Translation: AAM61000.1.
RefSeqiNP_566135.1. NM_110995.2.
UniGeneiAt.43760.

3D structure databases

ProteinModelPortaliQ9SRH6.
SMRiQ9SRH6. Positions 41-181.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi6642. 1 interaction.
IntActiQ9SRH6. 6 interactions.
STRINGi3702.AT3G01290.1-P.

Proteomic databases

PaxDbiQ9SRH6.
PRIDEiQ9SRH6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G01290.1; AT3G01290.1; AT3G01290.
GeneIDi821309.
KEGGiath:AT3G01290.

Organism-specific databases

TAIRiAT3G01290.

Phylogenomic databases

eggNOGiCOG0330.
HOGENOMiHOG000035168.
InParanoidiQ9SRH6.
OMAiAYGYEIL.
PhylomeDBiQ9SRH6.

Gene expression databases

GenevestigatoriQ9SRH6.

Family and domain databases

InterProiIPR001107. Band_7.
IPR028512. HIR.
IPR001972. Stomatin_fam.
[Graphical view]
PANTHERiPTHR10264. PTHR10264. 1 hit.
PTHR10264:SF25. PTHR10264:SF25. 1 hit.
PfamiPF01145. Band_7. 1 hit.
[Graphical view]
SMARTiSM00244. PHB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Arabidopsis ORF clones."
    Shinn P., Chen H., Kim C.J., Ecker J.R.
    Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  5. "Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome."
    Marmagne A., Rouet M.-A., Ferro M., Rolland N., Alcon C., Joyard J., Garin J., Barbier-Brygoo H., Ephritikhine G.
    Mol. Cell. Proteomics 3:675-691(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY, SUBCELLULAR LOCATION.
  6. "Arabidopsis plasma membrane proteomics identifies components of transport, signal transduction and membrane trafficking."
    Alexandersson E., Saalbach G., Larsson C., Kjellbom P.
    Plant Cell Physiol. 45:1543-1556(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
    Strain: cv. Columbia.
    Tissue: Leaf and Petiole.
  7. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  8. "A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome."
    Marmagne A., Ferro M., Meinnel T., Bruley C., Kuhn L., Garin J., Barbier-Brygoo H., Ephritikhine G.
    Mol. Cell. Proteomics 6:1980-1996(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  9. "New classes of proteins forming complexes with resistance proteins."
    Qi Y., Katagiri F.
    (In) Proceedings of the 20th international conference on Arabidopsis research, abstract#501734213, Edinburgh (2009)
    Cited for: INTERACTION WITH RESISTANCE PROTEINS, SUBUNIT, SUBCELLULAR LOCATION.

Entry informationi

Entry nameiHIR3_ARATH
AccessioniPrimary (citable) accession number: Q9SRH6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 5, 2010
Last sequence update: May 1, 2000
Last modified: January 7, 2015
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.