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Protein

Pentatricopeptide repeat-containing protein At3g04760, chloroplastic

Gene

At3g04760

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g04760, chloroplastic
Gene namesi
Ordered Locus Names:At3g04760
ORF Names:F7O18.25
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G04760
TAIRilocus:2084978 AT3G04760

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 78ChloroplastSequence analysisAdd BLAST78
ChainiPRO_000035607279 – 602Pentatricopeptide repeat-containing protein At3g04760, chloroplasticAdd BLAST524

Proteomic databases

PaxDbiQ9SR00

Expressioni

Gene expression databases

ExpressionAtlasiQ9SR00 baseline and differential
GenevisibleiQ9SR00 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G04760.1

Structurei

3D structure databases

ProteinModelPortaliQ9SR00
SMRiQ9SR00
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati88 – 122PPR 1Add BLAST35
Repeati123 – 153PPR 2Add BLAST31
Repeati157 – 191PPR 3Add BLAST35
Repeati192 – 226PPR 4Add BLAST35
Repeati227 – 261PPR 5Add BLAST35
Repeati262 – 296PPR 6Add BLAST35
Repeati297 – 331PPR 7Add BLAST35
Repeati332 – 366PPR 8Add BLAST35
Repeati367 – 401PPR 9Add BLAST35
Repeati402 – 436PPR 10Add BLAST35
Repeati437 – 471PPR 11Add BLAST35
Repeati472 – 506PPR 12Add BLAST35
Repeati507 – 541PPR 13Add BLAST35
Repeati542 – 576PPR 14Add BLAST35

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000238342
InParanoidiQ9SR00
OMAiYILLIEG
OrthoDBiEOG09360B6I
PhylomeDBiQ9SR00

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF12854 PPR_1, 3 hits
PF13041 PPR_2, 4 hits
SUPFAMiSSF48452 SSF48452, 2 hits
TIGRFAMsiTIGR00756 PPR, 11 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 14 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SR00-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTPLSSELVG FTIPFYSKTQ KPYSNSSHGL LLSHNRSSLL TFSNSNPNND
60 70 80 90 100
NGRSFSSSGA RNLQTTTTTD ATLPTERRQQ HSQSLGFRDT QMLKIFHRSC
110 120 130 140 150
RSGNYIESLH LLETMVRKGY NPDVILCTKL IKGFFTLRNI PKAVRVMEIL
160 170 180 190 200
EKFGQPDVFA YNALINGFCK MNRIDDATRV LDRMRSKDFS PDTVTYNIMI
210 220 230 240 250
GSLCSRGKLD LALKVLNQLL SDNCQPTVIT YTILIEATML EGGVDEALKL
260 270 280 290 300
MDEMLSRGLK PDMFTYNTII RGMCKEGMVD RAFEMVRNLE LKGCEPDVIS
310 320 330 340 350
YNILLRALLN QGKWEEGEKL MTKMFSEKCD PNVVTYSILI TTLCRDGKIE
360 370 380 390 400
EAMNLLKLMK EKGLTPDAYS YDPLIAAFCR EGRLDVAIEF LETMISDGCL
410 420 430 440 450
PDIVNYNTVL ATLCKNGKAD QALEIFGKLG EVGCSPNSSS YNTMFSALWS
460 470 480 490 500
SGDKIRALHM ILEMMSNGID PDEITYNSMI SCLCREGMVD EAFELLVDMR
510 520 530 540 550
SCEFHPSVVT YNIVLLGFCK AHRIEDAINV LESMVGNGCR PNETTYTVLI
560 570 580 590 600
EGIGFAGYRA EAMELANDLV RIDAISEYSF KRLHRTFPLL NVLQRSSQTF

GY
Length:602
Mass (Da):67,695
Last modified:May 1, 2000 - v1
Checksum:iCCEB4D1122C9BD8D
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti294C → S in BAD95034 (Ref. 4) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC011437 Genomic DNA Translation: AAF04902.1
CP002686 Genomic DNA Translation: AEE74132.1
AY056218 mRNA Translation: AAL07067.1
AY133775 mRNA Translation: AAM91709.1
AK221573 mRNA Translation: BAD95034.1
RefSeqiNP_566237.1, NM_111348.2
UniGeneiAt.18557

Genome annotation databases

EnsemblPlantsiAT3G04760.1; AT3G04760.1; AT3G04760
GeneIDi819636
GrameneiAT3G04760.1; AT3G04760.1; AT3G04760
KEGGiath:AT3G04760

Similar proteinsi

Entry informationi

Entry nameiPP213_ARATH
AccessioniPrimary (citable) accession number: Q9SR00
Secondary accession number(s): Q56XV0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 101 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health