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Protein

Tubby-like F-box protein 9

Gene

TULP9

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Confers sensitivity to ABA during seed germination and early seedling development.1 Publication

Pathwayi: protein ubiquitination

This protein is involved in the pathway protein ubiquitination, which is part of Protein modification.
View all proteins of this organism that are known to be involved in the pathway protein ubiquitination and in Protein modification.

GO - Molecular functioni

  • phosphatidylinositol binding Source: GO_Central
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • abscisic acid-activated signaling pathway Source: UniProtKB-KW
  • protein ubiquitination Source: UniProtKB-UniPathway
  • regulation of transcription, DNA-templated Source: TAIR
  • response to fungus Source: TAIR
Complete GO annotation...

Keywords - Biological processi

Abscisic acid signaling pathway, Ubl conjugation pathway

Enzyme and pathway databases

UniPathwayiUPA00143.

Names & Taxonomyi

Protein namesi
Recommended name:
Tubby-like F-box protein 9
Short name:
AtTLP9
Gene namesi
Name:TULP9
Ordered Locus Names:At3g06380
ORF Names:F24P17.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G06380.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002722371 – 380Tubby-like F-box protein 9Add BLAST380

Proteomic databases

PaxDbiQ9SQU1.
PRIDEiQ9SQU1.

Expressioni

Tissue specificityi

Ubiquitous.1 Publication

Developmental stagei

Expressed early during seed germination, especially in the preemergent radicle.1 Publication

Inductioni

During imbibition of seeds.1 Publication

Gene expression databases

GenevisibleiQ9SQU1. AT.

Interactioni

Subunit structurei

Part of a SCF (SKP1-cullin-F-box) protein ligase complex. Interacts with SKP1A/ASK1 and XERICO.2 Publications

Protein-protein interaction databases

BioGridi5147. 3 interactors.
IntActiQ9SQU1. 2 interactors.
STRINGi3702.AT3G06380.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SQU1.
SMRiQ9SQU1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini30 – 76F-boxAdd BLAST47

Sequence similaritiesi

Belongs to the TUB family.Curated
Contains 1 F-box domain.Curated

Phylogenomic databases

eggNOGiKOG2502. Eukaryota.
ENOG410XQFT. LUCA.
HOGENOMiHOG000238161.
InParanoidiQ9SQU1.
OMAiNRNTQSY.
OrthoDBiEOG09360CFC.
PhylomeDBiQ9SQU1.

Family and domain databases

Gene3Di3.20.90.10. 1 hit.
InterProiIPR001810. F-box_dom.
IPR000007. Tubby_C.
IPR025659. Tubby_C-like.
IPR018066. Tubby_C_CS.
[Graphical view]
PfamiPF00646. F-box. 1 hit.
PF01167. Tub. 1 hit.
[Graphical view]
PRINTSiPR01573. SUPERTUBBY.
SUPFAMiSSF54518. SSF54518. 1 hit.
SSF81383. SSF81383. 1 hit.
PROSITEiPS01200. TUB_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SQU1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTFRSLLQEM RSRPHRVVHA AASTANSSDP FSWSELPEEL LREILIRVET
60 70 80 90 100
VDGGDWPSRR NVVACAGVCR SWRILTKEIV AVPEFSSKLT FPISLKQSGP
110 120 130 140 150
RDSLVQCFIK RNRNTQSYHL YLGLTTSLTD NGKFLLAASK LKRATCTDYI
160 170 180 190 200
ISLRSDDISK RSNAYLGRMR SNFLGTKFTV FDGSQTGAAK MQKSRSSNFI
210 220 230 240 250
KVSPRVPQGS YPIAHISYEL NVLGSRGPRR MRCIMDTIPM SIVESRGVVA
260 270 280 290 300
STSISSFSSR SSPVFRSHSK PLRSNSASCS DSGNNLGDPP LVLSNKAPRW
310 320 330 340 350
HEQLRCWCLN FHGRVTVASV KNFQLVAVSD CEAGQTSERI ILQFGKVGKD
360 370 380
MFTMDYGYPI SAFQAFAICL SSFETRIACE
Length:380
Mass (Da):42,310
Last modified:May 1, 2000 - v1
Checksum:iEDB57859F8B5F51D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF487270 mRNA. Translation: AAQ06243.1.
AC011623 Genomic DNA. Translation: AAF08576.1.
CP002686 Genomic DNA. Translation: AEE74384.1.
BT026465 mRNA. Translation: ABH04572.1.
RefSeqiNP_187289.1. NM_111513.4.
UniGeneiAt.46725.

Genome annotation databases

EnsemblPlantsiAT3G06380.1; AT3G06380.1; AT3G06380.
GeneIDi819812.
GrameneiAT3G06380.1; AT3G06380.1; AT3G06380.
KEGGiath:AT3G06380.

Cross-referencesi

Web resourcesi

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF487270 mRNA. Translation: AAQ06243.1.
AC011623 Genomic DNA. Translation: AAF08576.1.
CP002686 Genomic DNA. Translation: AEE74384.1.
BT026465 mRNA. Translation: ABH04572.1.
RefSeqiNP_187289.1. NM_111513.4.
UniGeneiAt.46725.

3D structure databases

ProteinModelPortaliQ9SQU1.
SMRiQ9SQU1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi5147. 3 interactors.
IntActiQ9SQU1. 2 interactors.
STRINGi3702.AT3G06380.1.

Proteomic databases

PaxDbiQ9SQU1.
PRIDEiQ9SQU1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G06380.1; AT3G06380.1; AT3G06380.
GeneIDi819812.
GrameneiAT3G06380.1; AT3G06380.1; AT3G06380.
KEGGiath:AT3G06380.

Organism-specific databases

TAIRiAT3G06380.

Phylogenomic databases

eggNOGiKOG2502. Eukaryota.
ENOG410XQFT. LUCA.
HOGENOMiHOG000238161.
InParanoidiQ9SQU1.
OMAiNRNTQSY.
OrthoDBiEOG09360CFC.
PhylomeDBiQ9SQU1.

Enzyme and pathway databases

UniPathwayiUPA00143.

Miscellaneous databases

PROiQ9SQU1.

Gene expression databases

GenevisibleiQ9SQU1. AT.

Family and domain databases

Gene3Di3.20.90.10. 1 hit.
InterProiIPR001810. F-box_dom.
IPR000007. Tubby_C.
IPR025659. Tubby_C-like.
IPR018066. Tubby_C_CS.
[Graphical view]
PfamiPF00646. F-box. 1 hit.
PF01167. Tub. 1 hit.
[Graphical view]
PRINTSiPR01573. SUPERTUBBY.
SUPFAMiSSF54518. SSF54518. 1 hit.
SSF81383. SSF81383. 1 hit.
PROSITEiPS01200. TUB_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiTLP9_ARATH
AccessioniPrimary (citable) accession number: Q9SQU1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: May 1, 2000
Last modified: November 30, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.