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Q9SQR1 (Q9SQR1_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 67. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
At3g04010 EMBL ABJ98575.1
Submitted name:
O-Glycosyl hydrolases family 17 protein EMBL AEE74025.1
Submitted name:
Putative beta-1,3-glucanase EMBL AAF05860.1
Gene names
Name:T11I18.12 EMBL AAF05860.1
Ordered Locus Names:At3g04010 TAIR At3g04010
ORF Names:AT3G04010 EMBL AEE74025.1
OrganismArabidopsis thaliana (Mouse-ear cress) EMBL AAF05860.1
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length491 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 17 family. RuleBase RU004335

Sequences

Sequence LengthMass (Da)Tools
Q9SQR1 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: E43340F681B36873

FASTA49154,060
        10         20         30         40         50         60 
MNYRRKQSAI TNSAVVFIII SAVCFLSGGV SGLGVNWGTM ASHQLPPKTV VEMLKDNNIQ 

        70         80         90        100        110        120 
KVKLFDADTN TMGALAGSGV EVMVAIPNDL LLAMGNYQRA KDWVQRNVSR FNFNNGVKIK 

       130        140        150        160        170        180 
YVAVGNEPFL TAYNGSFINL TYPALFNIQT ALNEAGVGDF TKATVPLNAD VYNSPPDNQV 

       190        200        210        220        230        240 
PSAGRFRSDI IQEMTQIVNF LAQNKAPFTV NIYPFLSLYL SSDFPFEYAF FDGQNTVNDN 

       250        260        270        280        290        300 
GVIYTNVFDA SFDTLLASLN ALNHGNMEVI VGEVGWPTDG DKNANVPNAE RFYSGLLPRL 

       310        320        330        340        350        360 
ANNVGTPMRK GYIEVYLFGF IDEDAKSVAP GNFERHWGIF KFDGQPKFPV DFRGQGQKKF 

       370        380        390        400        410        420 
LTGAQNVQYF LNQWCMFNPN GRGNMSRLGD NINYACSHSD CTALGYGSSC GNLDANGNAS 

       430        440        450        460        470        480 
YAFNMYFQVQ NQEAQACDFE GLATITTQNI SQGQCNFPIQ IGEPSSGHYD YSYGSMVRLC 

       490 
LVMSGLVFLL I

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. expand/collapse author list , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
Nature 408:820-822(2000) [PubMed: 11130713] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]Arabidopsis TAIR10 Release
Swarbreck D., Lamesch P., Wilks C., Huala E.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[4]"Arabidopsis ORF Clones."
Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.
Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Arabidopsis thaliana chromosome III BAC T11I18 genomic sequence."
Lin X., Kaul S., Town C.D., Benito M.-I., Creasy T.H., Haas B., Ronning C.M., Koo H., Fujii C.Y., Utterback T.R., Barnstead M.E., Bowman C.L., White O., Nierman W.C., Fraser C.M.
Submitted (JAN-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AC011698 Genomic DNA. Translation: AAF05860.1.
BT029243 mRNA. Translation: ABJ98575.1.
CP002686 Genomic DNA. Translation: AEE74025.1.
IPIIPI00524444.
RefSeqNP_187051.3. NM_111272.3.
UniGeneAt.49382.

3D structure databases

HSSPHSSP built from PDB template 1AQ0 based on UniProtKB P12257.
ProteinModelPortalQ9SQR1.
SMRQ9SQR1. Positions 33-352, 364-460.
ModBaseSearch...

Protein family/group databases

CAZyCBM43. Carbohydrate-Binding Module Family 43.
GH17. Glycoside Hydrolase Family 17.

Proteomic databases

PRIDEQ9SQR1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G04010.1; AT3G04010.1; AT3G04010.
GeneID819556.
GenomeReviewsGene locus AT3G04010 in contig BA000014_GR.
KEGGath:AT3G04010.
NMPDRfig|3702.1.peg.12364.

Organism-specific databases

TAIRAt3g04010.

Phylogenomic databases

GeneTreeEPGT00050000009360.
HOGENOMHBG605194.
InParanoidQ9SQR1.
OMAPRLANNV.
PhylomeDBQ9SQR1.
ProtClustDBCLSN2916317.

Gene expression databases

GenevestigatorQ9SQR1.

Family and domain databases

InterProIPR000490. Glyco_hydro_17.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
IPR012946. X8.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
PfamPF00332. Glyco_hydro_17. 1 hit.
PF07983. X8. 1 hit.
[Graphical view]
SMARTSM00768. X8. 1 hit.
[Graphical view]
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
PROSITEPS00587. GLYCOSYL_HYDROL_F17. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ9SQR1_ARATH
AccessionPrimary (citable) accession number: Q9SQR1
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: January 25, 2012
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info