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Q9SNN0

- SPE1_ORYSJ

UniProt

Q9SNN0 - SPE1_ORYSJ

Protein

Arginine decarboxylase 1

Gene

ADC1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 88 (01 Oct 2014)
      Sequence version 1 (01 May 2000)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    L-arginine = agmatine + CO2.

    Cofactori

    Pyridoxal phosphate.By similarity
    Magnesium.By similarity

    Pathwayi

    GO - Molecular functioni

    1. arginine decarboxylase activity Source: UniProtKB-EC

    GO - Biological processi

    1. arginine catabolic process Source: InterPro
    2. putrescine biosynthetic process Source: UniProtKB-KW
    3. response to cold Source: UniProtKB
    4. spermidine biosynthetic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    Decarboxylase, Lyase

    Keywords - Biological processi

    Putrescine biosynthesis, Spermidine biosynthesis

    Keywords - Ligandi

    Magnesium, Pyridoxal phosphate

    Enzyme and pathway databases

    UniPathwayiUPA00186; UER00284.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Arginine decarboxylase 1 (EC:4.1.1.19)
    Short name:
    ARGDC1
    Short name:
    OsADC1
    Gene namesi
    Name:ADC1
    Ordered Locus Names:Os06g0131300, LOC_Os06g04070
    ORF Names:P0493C11.18
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 6

    Organism-specific databases

    GrameneiQ9SNN0.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 702702Arginine decarboxylase 1PRO_0000149952Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei151 – 1511N6-(pyridoxal phosphate)lysineBy similarity

    Expressioni

    Tissue specificityi

    Expressed in roots, leaves and stems (at protein level).2 Publications

    Inductioni

    By cold stress.1 Publication

    Interactioni

    Protein-protein interaction databases

    STRINGi39947.LOC_Os06g04070.1.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9SNN0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni336 – 34611Substrate-bindingBy similarityAdd
    BLAST

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi31 – 388Poly-Ala

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG1166.
    HOGENOMiHOG000029191.
    KOiK01583.
    OMAiARTMGLN.

    Family and domain databases

    Gene3Di2.40.37.10. 2 hits.
    3.20.20.10. 1 hit.
    InterProiIPR009006. Ala_racemase/Decarboxylase_C.
    IPR002985. Arg_decrbxlase.
    IPR022643. De-COase2_C.
    IPR022644. De-COase2_N.
    IPR022653. De-COase2_pyr-phos_BS.
    IPR000183. Orn/DAP/Arg_de-COase.
    IPR029066. PLP-binding_barrel.
    [Graphical view]
    PfamiPF02784. Orn_Arg_deC_N. 1 hit.
    PF00278. Orn_DAP_Arg_deC. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001336. Arg_decrbxlase. 1 hit.
    PRINTSiPR01180. ARGDCRBXLASE.
    PR01179. ODADCRBXLASE.
    SUPFAMiSSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    TIGRFAMsiTIGR01273. speA. 1 hit.
    PROSITEiPS00878. ODR_DC_2_1. 1 hit.
    PS00879. ODR_DC_2_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9SNN0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPALAVDAAA PVAHAFACDA ARFPAPLLGP AAAAAAVAEK PDAAAWSADL    50
    SSALYNVDGW GAPYFFVNDD GDVAVRPHGA ATLPGQEIDL AKVVAKAAGP 100
    RSGGGLGLPL PLLVRFPDVL RHRVEALNAA FDYAVRSTGY GGRYQGVYPV 150
    KCNQDRHVVE DIVEFGEPFR FGLEAGSKPE LLLAMSCLAA RGNPDALLIC 200
    NGYKDDEYVS LALIARTMGL NTVIVLEQEE ELDIVVDASR RLGVRPVVGM 250
    RAKLRTKHAG HFGSTSGEKG KFGLNAAQIL SVVAKLKTLG MLDCLQLLHF 300
    HIGSQIPTTA LLGDGVGEAA QIYCELARLG AAMRVIDVGG GLGIDYDGSH 350
    SAQTDMSVAY SLEEYAAAVV AAVGRVCDRK GVAHPIICSE SGRALVSHHS 400
    VLVFEAFSAS APGRIDPATG YLLDELTDDC HADYRNLMAA AVRGDFDTCA 450
    LYADQLKRRC ADQFKDGVLG LEHLAAVDSL CEIVARGMGA AEPPRTYHIN 500
    LSVFTSLPDM WAIGQMFPII PIQRLGERPA VDGVLSDLTC DSDGKVDHFI 550
    GGRHSLPLHE LPVHGTRGYY LGMFLGGAYQ EALGGLHNLF GGPSVVRVSQ 600
    SDGPHCFAVT RAAAGPSCAD VLRSMQHEPE VMFEVLKQRT DGATAAALAR 650
    AFGAMPYLSF DPEAAAMASG ESSGMSSDSE GSAAGAAEED DDEWEFMRGL 700
    TV 702
    Length:702
    Mass (Da):74,064
    Last modified:May 1, 2000 - v1
    Checksum:i3B6B8E7AF4959126
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti235 – 2351V → M in ABY47890. (PubMed:20082138)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY604047 mRNA. Translation: AAT37534.1.
    EU220429 mRNA. Translation: ABY47890.1.
    AP000559 Genomic DNA. Translation: BAA84799.1.
    AP008212 Genomic DNA. Translation: BAF18609.1.
    RefSeqiNP_001056695.1. NM_001063230.1.
    UniGeneiOs.75600.

    Genome annotation databases

    EnsemblPlantsiOS06T0131300-00; OS06T0131300-00; OS06G0131300.
    GeneIDi4340008.
    KEGGiosa:4340008.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY604047 mRNA. Translation: AAT37534.1 .
    EU220429 mRNA. Translation: ABY47890.1 .
    AP000559 Genomic DNA. Translation: BAA84799.1 .
    AP008212 Genomic DNA. Translation: BAF18609.1 .
    RefSeqi NP_001056695.1. NM_001063230.1.
    UniGenei Os.75600.

    3D structure databases

    ProteinModelPortali Q9SNN0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 39947.LOC_Os06g04070.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS06T0131300-00 ; OS06T0131300-00 ; OS06G0131300 .
    GeneIDi 4340008.
    KEGGi osa:4340008.

    Organism-specific databases

    Gramenei Q9SNN0.

    Phylogenomic databases

    eggNOGi COG1166.
    HOGENOMi HOG000029191.
    KOi K01583.
    OMAi ARTMGLN.

    Enzyme and pathway databases

    UniPathwayi UPA00186 ; UER00284 .

    Family and domain databases

    Gene3Di 2.40.37.10. 2 hits.
    3.20.20.10. 1 hit.
    InterProi IPR009006. Ala_racemase/Decarboxylase_C.
    IPR002985. Arg_decrbxlase.
    IPR022643. De-COase2_C.
    IPR022644. De-COase2_N.
    IPR022653. De-COase2_pyr-phos_BS.
    IPR000183. Orn/DAP/Arg_de-COase.
    IPR029066. PLP-binding_barrel.
    [Graphical view ]
    Pfami PF02784. Orn_Arg_deC_N. 1 hit.
    PF00278. Orn_DAP_Arg_deC. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001336. Arg_decrbxlase. 1 hit.
    PRINTSi PR01180. ARGDCRBXLASE.
    PR01179. ODADCRBXLASE.
    SUPFAMi SSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    TIGRFAMsi TIGR01273. speA. 1 hit.
    PROSITEi PS00878. ODR_DC_2_1. 1 hit.
    PS00879. ODR_DC_2_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Molecular cloning and characterization of an arginine decarboxylase gene up-regulated by chilling stress in rice seedlings."
      Akiyama T., Jin S.
      J. Plant Physiol. 164:645-654(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, INDUCTION.
    2. "Molecular characterization of the Arginine decarboxylase gene family in rice."
      Peremarti A., Bassie L., Zhu C., Christou P., Capell T.
      Transgenic Res. 19:785-797(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY.
      Strain: cv. Eyi 105.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    4. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiSPE1_ORYSJ
    AccessioniPrimary (citable) accession number: Q9SNN0
    Secondary accession number(s): A9YLB8, Q0DEW4, Q6J285
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 1, 2000
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 88 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3