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Q9SNN0 (SPE1_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 85. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Arginine decarboxylase 1

Short name=ARGDC1
Short name=OsADC1
EC=4.1.1.19
Gene names
Name:ADC1
Ordered Locus Names:Os06g0131300, LOC_Os06g04070
ORF Names:P0493C11.18
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length702 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Catalytic activity

L-arginine = agmatine + CO2.

Cofactor

Pyridoxal phosphate By similarity.

Magnesium By similarity.

Pathway

Amine and polyamine biosynthesis; agmatine biosynthesis; agmatine from L-arginine: step 1/1.

Tissue specificity

Expressed in roots, leaves and stems (at protein level). Ref.1 Ref.2

Induction

By cold stress. Ref.1

Sequence similarities

Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 702702Arginine decarboxylase 1
PRO_0000149952

Regions

Region336 – 34611Substrate-binding By similarity
Compositional bias31 – 388Poly-Ala

Amino acid modifications

Modified residue1511N6-(pyridoxal phosphate)lysine By similarity

Experimental info

Sequence conflict2351V → M in ABY47890. Ref.2

Sequences

Sequence LengthMass (Da)Tools
Q9SNN0 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 3B6B8E7AF4959126

FASTA70274,064
        10         20         30         40         50         60 
MPALAVDAAA PVAHAFACDA ARFPAPLLGP AAAAAAVAEK PDAAAWSADL SSALYNVDGW 

        70         80         90        100        110        120 
GAPYFFVNDD GDVAVRPHGA ATLPGQEIDL AKVVAKAAGP RSGGGLGLPL PLLVRFPDVL 

       130        140        150        160        170        180 
RHRVEALNAA FDYAVRSTGY GGRYQGVYPV KCNQDRHVVE DIVEFGEPFR FGLEAGSKPE 

       190        200        210        220        230        240 
LLLAMSCLAA RGNPDALLIC NGYKDDEYVS LALIARTMGL NTVIVLEQEE ELDIVVDASR 

       250        260        270        280        290        300 
RLGVRPVVGM RAKLRTKHAG HFGSTSGEKG KFGLNAAQIL SVVAKLKTLG MLDCLQLLHF 

       310        320        330        340        350        360 
HIGSQIPTTA LLGDGVGEAA QIYCELARLG AAMRVIDVGG GLGIDYDGSH SAQTDMSVAY 

       370        380        390        400        410        420 
SLEEYAAAVV AAVGRVCDRK GVAHPIICSE SGRALVSHHS VLVFEAFSAS APGRIDPATG 

       430        440        450        460        470        480 
YLLDELTDDC HADYRNLMAA AVRGDFDTCA LYADQLKRRC ADQFKDGVLG LEHLAAVDSL 

       490        500        510        520        530        540 
CEIVARGMGA AEPPRTYHIN LSVFTSLPDM WAIGQMFPII PIQRLGERPA VDGVLSDLTC 

       550        560        570        580        590        600 
DSDGKVDHFI GGRHSLPLHE LPVHGTRGYY LGMFLGGAYQ EALGGLHNLF GGPSVVRVSQ 

       610        620        630        640        650        660 
SDGPHCFAVT RAAAGPSCAD VLRSMQHEPE VMFEVLKQRT DGATAAALAR AFGAMPYLSF 

       670        680        690        700 
DPEAAAMASG ESSGMSSDSE GSAAGAAEED DDEWEFMRGL TV 

« Hide

References

« Hide 'large scale' references
[1]"Molecular cloning and characterization of an arginine decarboxylase gene up-regulated by chilling stress in rice seedlings."
Akiyama T., Jin S.
J. Plant Physiol. 164:645-654(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, INDUCTION.
[2]"Molecular characterization of the Arginine decarboxylase gene family in rice."
Peremarti A., Bassie L., Zhu C., Christou P., Capell T.
Transgenic Res. 19:785-797(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY.
Strain: cv. Eyi 105.
[3]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[4]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY604047 mRNA. Translation: AAT37534.1.
EU220429 mRNA. Translation: ABY47890.1.
AP000559 Genomic DNA. Translation: BAA84799.1.
AP008212 Genomic DNA. Translation: BAF18609.1.
RefSeqNP_001056695.1. NM_001063230.1.
UniGeneOs.75600.

3D structure databases

ProteinModelPortalQ9SNN0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING39947.LOC_Os06g04070.1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS06T0131300-00; OS06T0131300-00; OS06G0131300.
GeneID4340008.
KEGGosa:4340008.

Organism-specific databases

GrameneQ9SNN0.

Phylogenomic databases

eggNOGCOG1166.
HOGENOMHOG000029191.
KOK01583.
OMAMIHFHIG.
ProtClustDBPLN02439.

Enzyme and pathway databases

UniPathwayUPA00186; UER00284.

Family and domain databases

Gene3D2.40.37.10. 2 hits.
InterProIPR009006. Ala_racemase/Decarboxylase_C.
IPR002985. Arg_decrbxlase.
IPR022643. De-COase2_C.
IPR022644. De-COase2_N.
IPR022653. De-COase2_pyr-phos_BS.
IPR000183. Orn/DAP/Arg_de-COase.
[Graphical view]
PfamPF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view]
PIRSFPIRSF001336. Arg_decrbxlase. 1 hit.
PRINTSPR01180. ARGDCRBXLASE.
PR01179. ODADCRBXLASE.
SUPFAMSSF50621. SSF50621. 1 hit.
TIGRFAMsTIGR01273. speA. 1 hit.
PROSITEPS00878. ODR_DC_2_1. 1 hit.
PS00879. ODR_DC_2_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSPE1_ORYSJ
AccessionPrimary (citable) accession number: Q9SNN0
Secondary accession number(s): A9YLB8, Q0DEW4, Q6J285
Entry history
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 1, 2000
Last modified: April 16, 2014
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations

PATHWAY comments

Index of metabolic and biosynthesis pathways