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Q9SNN0

- SPE1_ORYSJ

UniProt

Q9SNN0 - SPE1_ORYSJ

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Protein

Arginine decarboxylase 1

Gene
ADC1, Os06g0131300, LOC_Os06g04070, P0493C11.18
Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Catalytic activityi

L-arginine = agmatine + CO2.

Cofactori

Pyridoxal phosphate By similarity.
Magnesium By similarity.

Pathwayi

GO - Molecular functioni

  1. arginine decarboxylase activity Source: UniProtKB-EC

GO - Biological processi

  1. arginine catabolic process Source: InterPro
  2. putrescine biosynthetic process Source: UniProtKB-KW
  3. response to cold Source: UniProtKB
  4. spermidine biosynthetic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Decarboxylase, Lyase

Keywords - Biological processi

Putrescine biosynthesis, Spermidine biosynthesis

Keywords - Ligandi

Magnesium, Pyridoxal phosphate

Enzyme and pathway databases

UniPathwayiUPA00186; UER00284.

Names & Taxonomyi

Protein namesi
Recommended name:
Arginine decarboxylase 1 (EC:4.1.1.19)
Short name:
ARGDC1
Short name:
OsADC1
Gene namesi
Name:ADC1
Ordered Locus Names:Os06g0131300, LOC_Os06g04070
ORF Names:P0493C11.18
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 6

Organism-specific databases

GrameneiQ9SNN0.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 702702Arginine decarboxylase 1PRO_0000149952Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei151 – 1511N6-(pyridoxal phosphate)lysine By similarity

Expressioni

Tissue specificityi

Expressed in roots, leaves and stems (at protein level).2 Publications

Inductioni

By cold stress.1 Publication

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os06g04070.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SNN0.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni336 – 34611Substrate-binding By similarityAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi31 – 388Poly-Ala

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1166.
HOGENOMiHOG000029191.
KOiK01583.
OMAiARTMGLN.

Family and domain databases

Gene3Di2.40.37.10. 2 hits.
3.20.20.10. 1 hit.
InterProiIPR009006. Ala_racemase/Decarboxylase_C.
IPR002985. Arg_decrbxlase.
IPR022643. De-COase2_C.
IPR022644. De-COase2_N.
IPR022653. De-COase2_pyr-phos_BS.
IPR000183. Orn/DAP/Arg_de-COase.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view]
PIRSFiPIRSF001336. Arg_decrbxlase. 1 hit.
PRINTSiPR01180. ARGDCRBXLASE.
PR01179. ODADCRBXLASE.
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR01273. speA. 1 hit.
PROSITEiPS00878. ODR_DC_2_1. 1 hit.
PS00879. ODR_DC_2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SNN0-1 [UniParc]FASTAAdd to Basket

« Hide

MPALAVDAAA PVAHAFACDA ARFPAPLLGP AAAAAAVAEK PDAAAWSADL    50
SSALYNVDGW GAPYFFVNDD GDVAVRPHGA ATLPGQEIDL AKVVAKAAGP 100
RSGGGLGLPL PLLVRFPDVL RHRVEALNAA FDYAVRSTGY GGRYQGVYPV 150
KCNQDRHVVE DIVEFGEPFR FGLEAGSKPE LLLAMSCLAA RGNPDALLIC 200
NGYKDDEYVS LALIARTMGL NTVIVLEQEE ELDIVVDASR RLGVRPVVGM 250
RAKLRTKHAG HFGSTSGEKG KFGLNAAQIL SVVAKLKTLG MLDCLQLLHF 300
HIGSQIPTTA LLGDGVGEAA QIYCELARLG AAMRVIDVGG GLGIDYDGSH 350
SAQTDMSVAY SLEEYAAAVV AAVGRVCDRK GVAHPIICSE SGRALVSHHS 400
VLVFEAFSAS APGRIDPATG YLLDELTDDC HADYRNLMAA AVRGDFDTCA 450
LYADQLKRRC ADQFKDGVLG LEHLAAVDSL CEIVARGMGA AEPPRTYHIN 500
LSVFTSLPDM WAIGQMFPII PIQRLGERPA VDGVLSDLTC DSDGKVDHFI 550
GGRHSLPLHE LPVHGTRGYY LGMFLGGAYQ EALGGLHNLF GGPSVVRVSQ 600
SDGPHCFAVT RAAAGPSCAD VLRSMQHEPE VMFEVLKQRT DGATAAALAR 650
AFGAMPYLSF DPEAAAMASG ESSGMSSDSE GSAAGAAEED DDEWEFMRGL 700
TV 702
Length:702
Mass (Da):74,064
Last modified:May 1, 2000 - v1
Checksum:i3B6B8E7AF4959126
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti235 – 2351V → M in ABY47890. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY604047 mRNA. Translation: AAT37534.1.
EU220429 mRNA. Translation: ABY47890.1.
AP000559 Genomic DNA. Translation: BAA84799.1.
AP008212 Genomic DNA. Translation: BAF18609.1.
RefSeqiNP_001056695.1. NM_001063230.1.
UniGeneiOs.75600.

Genome annotation databases

EnsemblPlantsiOS06T0131300-00; OS06T0131300-00; OS06G0131300.
GeneIDi4340008.
KEGGiosa:4340008.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY604047 mRNA. Translation: AAT37534.1 .
EU220429 mRNA. Translation: ABY47890.1 .
AP000559 Genomic DNA. Translation: BAA84799.1 .
AP008212 Genomic DNA. Translation: BAF18609.1 .
RefSeqi NP_001056695.1. NM_001063230.1.
UniGenei Os.75600.

3D structure databases

ProteinModelPortali Q9SNN0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 39947.LOC_Os06g04070.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS06T0131300-00 ; OS06T0131300-00 ; OS06G0131300 .
GeneIDi 4340008.
KEGGi osa:4340008.

Organism-specific databases

Gramenei Q9SNN0.

Phylogenomic databases

eggNOGi COG1166.
HOGENOMi HOG000029191.
KOi K01583.
OMAi ARTMGLN.

Enzyme and pathway databases

UniPathwayi UPA00186 ; UER00284 .

Family and domain databases

Gene3Di 2.40.37.10. 2 hits.
3.20.20.10. 1 hit.
InterProi IPR009006. Ala_racemase/Decarboxylase_C.
IPR002985. Arg_decrbxlase.
IPR022643. De-COase2_C.
IPR022644. De-COase2_N.
IPR022653. De-COase2_pyr-phos_BS.
IPR000183. Orn/DAP/Arg_de-COase.
IPR029066. PLP-binding_barrel.
[Graphical view ]
Pfami PF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view ]
PIRSFi PIRSF001336. Arg_decrbxlase. 1 hit.
PRINTSi PR01180. ARGDCRBXLASE.
PR01179. ODADCRBXLASE.
SUPFAMi SSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsi TIGR01273. speA. 1 hit.
PROSITEi PS00878. ODR_DC_2_1. 1 hit.
PS00879. ODR_DC_2_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular cloning and characterization of an arginine decarboxylase gene up-regulated by chilling stress in rice seedlings."
    Akiyama T., Jin S.
    J. Plant Physiol. 164:645-654(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, INDUCTION.
  2. "Molecular characterization of the Arginine decarboxylase gene family in rice."
    Peremarti A., Bassie L., Zhu C., Christou P., Capell T.
    Transgenic Res. 19:785-797(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY.
    Strain: cv. Eyi 105.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  4. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiSPE1_ORYSJ
AccessioniPrimary (citable) accession number: Q9SNN0
Secondary accession number(s): A9YLB8, Q0DEW4, Q6J285
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 1, 2000
Last modified: June 11, 2014
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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