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Protein

Pentatricopeptide repeat-containing protein At3g46610

Gene

At3g46610

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g46610
Gene namesi
Ordered Locus Names:At3g46610
ORF Names:F12A12.130
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G46610.
TAIRilocus:2075165. AT3G46610.

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003561231 – 665Pentatricopeptide repeat-containing protein At3g46610Add BLAST665

Proteomic databases

PaxDbiQ9SNB7.
PRIDEiQ9SNB7.

Expressioni

Gene expression databases

GenevisibleiQ9SNB7. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G46610.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SNB7.
SMRiQ9SNB7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati145 – 179PPR 1Add BLAST35
Repeati181 – 217PPR 2Add BLAST37
Repeati218 – 252PPR 3Add BLAST35
Repeati253 – 283PPR 4Add BLAST31
Repeati309 – 344PPR 5Add BLAST36
Repeati345 – 375PPR 6Add BLAST31
Repeati380 – 414PPR 7Add BLAST35
Repeati422 – 456PPR 8Add BLAST35
Repeati457 – 491PPR 9Add BLAST35
Repeati492 – 526PPR 10Add BLAST35
Repeati527 – 561PPR 11Add BLAST35
Repeati562 – 596PPR 12Add BLAST35
Repeati597 – 631PPR 13Add BLAST35

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi49 – 55Poly-Ser7

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000244055.
InParanoidiQ9SNB7.
OMAiLAYEMYM.
OrthoDBiEOG093603I2.
PhylomeDBiQ9SNB7.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiView protein in InterPro
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom_sf.
PfamiView protein in Pfam
PF01535. PPR. 2 hits.
PF13041. PPR_2. 2 hits.
PF13812. PPR_3. 1 hit.
TIGRFAMsiTIGR00756. PPR. 5 hits.
PROSITEiView protein in PROSITE
PS51375. PPR. 12 hits.

Sequencei

Sequence statusi: Complete.

Q9SNB7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQALSILPLK SGLLVGSRLE FELDCSCFVV SPKTTRKRLC FLEQACFGSS
60 70 80 90 100
SSISSFIFVS SNRKVLFLCE PKRSLLGSSF GVGWATEQRE LELGEEEVST
110 120 130 140 150
EDLSSANGGE KNNLRVDVRE LAFSLRAAKT ADDVDAVLKD KGELPLQVFC
160 170 180 190 200
AMIKGFGKDK RLKPAVAVVD WLKRKKSESG GVIGPNLFIY NSLLGAMRGF
210 220 230 240 250
GEAEKILKDM EEEGIVPNIV TYNTLMVIYM EEGEFLKALG ILDLTKEKGF
260 270 280 290 300
EPNPITYSTA LLVYRRMEDG MGALEFFVEL REKYAKREIG NDVGYDWEFE
310 320 330 340 350
FVKLENFIGR ICYQVMRRWL VKDDNWTTRV LKLLNAMDSA GVRPSREEHE
360 370 380 390 400
RLIWACTREE HYIVGKELYK RIRERFSEIS LSVCNHLIWL MGKAKKWWAA
410 420 430 440 450
LEIYEDLLDE GPEPNNLSYE LVVSHFNILL SAASKRGIWR WGVRLLNKME
460 470 480 490 500
DKGLKPQRRH WNAVLVACSK ASETTAAIQI FKAMVDNGEK PTVISYGALL
510 520 530 540 550
SALEKGKLYD EAFRVWNHMI KVGIEPNLYA YTTMASVLTG QQKFNLLDTL
560 570 580 590 600
LKEMASKGIE PSVVTFNAVI SGCARNGLSG VAYEWFHRMK SENVEPNEIT
610 620 630 640 650
YEMLIEALAN DAKPRLAYEL HVKAQNEGLK LSSKPYDAVV KSAETYGATI
660
DLNLLGPRPD KKNRP
Length:665
Mass (Da):75,175
Last modified:May 1, 2000 - v1
Checksum:iD2D9172C819596D9
GO

Sequence cautioni

The sequence BX825001 differs from that shown. Sequencing errors.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL133314 Genomic DNA. Translation: CAB62331.1.
CP002686 Genomic DNA. Translation: AEE78181.1.
CP002686 Genomic DNA. Translation: ANM65376.1.
BX825001 mRNA. No translation available.
PIRiT45598.
RefSeqiNP_001319696.1. NM_001339269.1.
NP_190245.1. NM_114528.2.
UniGeneiAt.49645.

Genome annotation databases

EnsemblPlantsiAT3G46610.1; AT3G46610.1; AT3G46610.
AT3G46610.2; AT3G46610.2; AT3G46610.
GeneIDi823814.
GrameneiAT3G46610.1; AT3G46610.1; AT3G46610.
AT3G46610.2; AT3G46610.2; AT3G46610.
KEGGiath:AT3G46610.

Similar proteinsi

Entry informationi

Entry nameiPP264_ARATH
AccessioniPrimary (citable) accession number: Q9SNB7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 2000
Last modified: November 22, 2017
This is version 87 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families