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Q9SN89

- CML47_ARATH

UniProt

Q9SN89 - CML47_ARATH

Protein

Probable calcium-binding protein CML47

Gene

CML47

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 85 (01 Oct 2014)
      Sequence version 1 (01 May 2000)
      Previous versions | rss
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    Functioni

    Potential calcium sensor.By similarity

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Calcium bindingi125 – 136121PROSITE-ProRule annotationAdd
    BLAST
    Calcium bindingi162 – 173122PROSITE-ProRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. calcium ion binding Source: InterPro

    Keywords - Ligandi

    Calcium, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable calcium-binding protein CML47
    Alternative name(s):
    Calmodulin-like protein 47
    Gene namesi
    Name:CML47
    Ordered Locus Names:At3g47480
    ORF Names:F1P2.30
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3

    Organism-specific databases

    TAIRiAT3G47480.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 183183Probable calcium-binding protein CML47PRO_0000342970Add
    BLAST

    Proteomic databases

    PRIDEiQ9SN89.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9SN89.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.AT3G47480.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9SN89.
    SMRiQ9SN89. Positions 43-178.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini112 – 14736EF-hand 1PROSITE-ProRule annotationAdd
    BLAST
    Domaini149 – 18335EF-hand 2PROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 2 EF-hand domains.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat

    Phylogenomic databases

    eggNOGiNOG312560.
    HOGENOMiHOG000111810.
    KOiK13448.
    OMAiDENELKH.
    PhylomeDBiQ9SN89.

    Family and domain databases

    Gene3Di1.10.238.10. 1 hit.
    InterProiIPR011992. EF-hand-dom_pair.
    IPR018247. EF_Hand_1_Ca_BS.
    IPR002048. EF_hand_dom.
    [Graphical view]
    PfamiPF13499. EF-hand_7. 1 hit.
    [Graphical view]
    SMARTiSM00054. EFh. 2 hits.
    [Graphical view]
    PROSITEiPS00018. EF_HAND_1. 2 hits.
    PS50222. EF_HAND_2. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9SN89-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEDSSLLSPI SLLTIVIFLF ILNLMMIIQD FSSSFPFRFH LFFSNAYILF    50
    TSIRNNKQNT ELPIIKKVVV PNRADIKTSV EEVKAIIDDS EALYECLIEE 100
    GEEYLLEKNE MMGKEIVKEA FRLFDENQDG FIDENELKHV LSLLGYDECT 150
    KMECRKMVKV YDENRDGKID FYEFVKLIEK SFS 183
    Length:183
    Mass (Da):21,458
    Last modified:May 1, 2000 - v1
    Checksum:i7939BA9841584C11
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL132955 Genomic DNA. Translation: CAB61974.1.
    CP002686 Genomic DNA. Translation: AEE78286.1.
    BT012166 mRNA. Translation: AAS76261.1.
    PIRiT45708.
    RefSeqiNP_190332.1. NM_114616.2.
    UniGeneiAt.35802.

    Genome annotation databases

    EnsemblPlantsiAT3G47480.1; AT3G47480.1; AT3G47480.
    GeneIDi823902.
    KEGGiath:AT3G47480.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL132955 Genomic DNA. Translation: CAB61974.1 .
    CP002686 Genomic DNA. Translation: AEE78286.1 .
    BT012166 mRNA. Translation: AAS76261.1 .
    PIRi T45708.
    RefSeqi NP_190332.1. NM_114616.2.
    UniGenei At.35802.

    3D structure databases

    ProteinModelPortali Q9SN89.
    SMRi Q9SN89. Positions 43-178.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT3G47480.1-P.

    Proteomic databases

    PRIDEi Q9SN89.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT3G47480.1 ; AT3G47480.1 ; AT3G47480 .
    GeneIDi 823902.
    KEGGi ath:AT3G47480.

    Organism-specific databases

    TAIRi AT3G47480.

    Phylogenomic databases

    eggNOGi NOG312560.
    HOGENOMi HOG000111810.
    KOi K13448.
    OMAi DENELKH.
    PhylomeDBi Q9SN89.

    Gene expression databases

    Genevestigatori Q9SN89.

    Family and domain databases

    Gene3Di 1.10.238.10. 1 hit.
    InterProi IPR011992. EF-hand-dom_pair.
    IPR018247. EF_Hand_1_Ca_BS.
    IPR002048. EF_hand_dom.
    [Graphical view ]
    Pfami PF13499. EF-hand_7. 1 hit.
    [Graphical view ]
    SMARTi SM00054. EFh. 2 hits.
    [Graphical view ]
    PROSITEi PS00018. EF_HAND_1. 2 hits.
    PS50222. EF_HAND_2. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
      Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
      , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Arabidopsis ORF clones."
      Kim C.J., Chen H., Cheuk R.F., Shinn P., Carninci P., Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Narusaka M., Sakurai T., Satou M., Seki M., Shinozaki K., Ecker J.R.
      Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    4. "Calmodulins and related potential calcium sensors of Arabidopsis."
      McCormack E., Braam J.
      New Phytol. 159:585-598(2003)
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiCML47_ARATH
    AccessioniPrimary (citable) accession number: Q9SN89
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 1, 2008
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 85 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Caution

    Although assigned as a calmodulin family member by , it only contains EF-hand domains.Curated

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3