Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Pentatricopeptide repeat-containing protein At3g47530

Gene

PCMP-H76

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g47530
Gene namesi
Name:PCMP-H76
Ordered Locus Names:At3g47530
ORF Names:F1P2.80
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G47530
TAIRilocus:2079187 AT3G47530

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003561261 – 591Pentatricopeptide repeat-containing protein At3g47530Add BLAST591

Proteomic databases

PaxDbiQ9SN85
PRIDEiQ9SN85

Expressioni

Gene expression databases

ExpressionAtlasiQ9SN85 baseline and differential
GenevisibleiQ9SN85 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G47530.1

Structurei

3D structure databases

ProteinModelPortaliQ9SN85
SMRiQ9SN85
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati76 – 110PPR 1Add BLAST35
Repeati112 – 146PPR 2Add BLAST35
Repeati147 – 177PPR 3Add BLAST31
Repeati178 – 208PPR 4Add BLAST31
Repeati216 – 250PPR 5Add BLAST35
Repeati251 – 281PPR 6Add BLAST31
Repeati282 – 316PPR 7Add BLAST35
Repeati317 – 351PPR 8Add BLAST35
Repeati354 – 384PPR 9Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni389 – 464Type E motifAdd BLAST76
Regioni465 – 495Type E(+) motifAdd BLAST31
Regioni496 – 591Type DYW motifAdd BLAST96

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi4 – 9Poly-Ser6

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237569
InParanoidiQ9SN85
OMAiPNVHHYG
OrthoDBiEOG093609XY
PhylomeDBiQ9SN85

Family and domain databases

Gene3Di1.25.40.10, 3 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 2 hits
PF13041 PPR_2, 1 hit
TIGRFAMsiTIGR00756 PPR, 3 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 11 hits

Sequencei

Sequence statusi: Complete.

Q9SN85-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLKSISSSSG DDHLLSLIVS STGKLHLRQI HALLLRTSLI RNSDVFHHFL
60 70 80 90 100
SRLALSLIPR DINYSCRVFS QRLNPTLSHC NTMIRAFSLS QTPCEGFRLF
110 120 130 140 150
RSLRRNSSLP ANPLSSSFAL KCCIKSGDLL GGLQIHGKIF SDGFLSDSLL
160 170 180 190 200
MTTLMDLYST CENSTDACKV FDEIPKRDTV SWNVLFSCYL RNKRTRDVLV
210 220 230 240 250
LFDKMKNDVD GCVKPDGVTC LLALQACANL GALDFGKQVH DFIDENGLSG
260 270 280 290 300
ALNLSNTLVS MYSRCGSMDK AYQVFYGMRE RNVVSWTALI SGLAMNGFGK
310 320 330 340 350
EAIEAFNEML KFGISPEEQT LTGLLSACSH SGLVAEGMMF FDRMRSGEFK
360 370 380 390 400
IKPNLHHYGC VVDLLGRARL LDKAYSLIKS MEMKPDSTIW RTLLGACRVH
410 420 430 440 450
GDVELGERVI SHLIELKAEE AGDYVLLLNT YSTVGKWEKV TELRSLMKEK
460 470 480 490 500
RIHTKPGCSA IELQGTVHEF IVDDVSHPRK EEIYKMLAEI NQQLKIAGYV
510 520 530 540 550
AEITSELHNL ESEEEKGYAL RYHSEKLAIA FGILVTPPGT TIRVTKNLRT
560 570 580 590
CVDCHNFAKF VSDVYDRIVI VRDRSRFHHF KGGSCSCNDF W
Length:591
Mass (Da):66,326
Last modified:May 1, 2000 - v1
Checksum:iCCF9D560806E20B0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132955 Genomic DNA Translation: CAB61979.1
CP002686 Genomic DNA Translation: AEE78293.1
AK221462 mRNA Translation: BAD94558.1
PIRiT45713
RefSeqiNP_190337.1, NM_114621.3
UniGeneiAt.49647

Genome annotation databases

EnsemblPlantsiAT3G47530.1; AT3G47530.1; AT3G47530
GeneIDi823907
GrameneiAT3G47530.1; AT3G47530.1; AT3G47530
KEGGiath:AT3G47530

Similar proteinsi

Entry informationi

Entry nameiPP267_ARATH
AccessioniPrimary (citable) accession number: Q9SN85
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 2000
Last modified: May 23, 2018
This is version 93 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Cookie policy

We would like to use anonymized google analytics cookies to gather statistics on how uniprot.org is used in aggregate. Learn more

UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health