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Protein

Pentatricopeptide repeat-containing protein At3g47530

Gene

PCMP-H76

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g47530
Gene namesi
Name:PCMP-H76
Ordered Locus Names:At3g47530
ORF Names:F1P2.80
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G47530.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003561261 – 591Pentatricopeptide repeat-containing protein At3g47530Add BLAST591

Proteomic databases

PaxDbiQ9SN85.

Expressioni

Gene expression databases

GenevisibleiQ9SN85. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G47530.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SN85.
SMRiQ9SN85.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati76 – 110PPR 1Add BLAST35
Repeati112 – 146PPR 2Add BLAST35
Repeati147 – 177PPR 3Add BLAST31
Repeati178 – 208PPR 4Add BLAST31
Repeati216 – 250PPR 5Add BLAST35
Repeati251 – 281PPR 6Add BLAST31
Repeati282 – 316PPR 7Add BLAST35
Repeati317 – 351PPR 8Add BLAST35
Repeati354 – 384PPR 9Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni389 – 464Type E motifAdd BLAST76
Regioni465 – 495Type E(+) motifAdd BLAST31
Regioni496 – 591Type DYW motifAdd BLAST96

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi4 – 9Poly-Ser6

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated
Contains 9 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9SN85.
OMAiDSTIWRT.
OrthoDBiEOG093609XY.
PhylomeDBiQ9SN85.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 2 hits.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 11 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SN85-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLKSISSSSG DDHLLSLIVS STGKLHLRQI HALLLRTSLI RNSDVFHHFL
60 70 80 90 100
SRLALSLIPR DINYSCRVFS QRLNPTLSHC NTMIRAFSLS QTPCEGFRLF
110 120 130 140 150
RSLRRNSSLP ANPLSSSFAL KCCIKSGDLL GGLQIHGKIF SDGFLSDSLL
160 170 180 190 200
MTTLMDLYST CENSTDACKV FDEIPKRDTV SWNVLFSCYL RNKRTRDVLV
210 220 230 240 250
LFDKMKNDVD GCVKPDGVTC LLALQACANL GALDFGKQVH DFIDENGLSG
260 270 280 290 300
ALNLSNTLVS MYSRCGSMDK AYQVFYGMRE RNVVSWTALI SGLAMNGFGK
310 320 330 340 350
EAIEAFNEML KFGISPEEQT LTGLLSACSH SGLVAEGMMF FDRMRSGEFK
360 370 380 390 400
IKPNLHHYGC VVDLLGRARL LDKAYSLIKS MEMKPDSTIW RTLLGACRVH
410 420 430 440 450
GDVELGERVI SHLIELKAEE AGDYVLLLNT YSTVGKWEKV TELRSLMKEK
460 470 480 490 500
RIHTKPGCSA IELQGTVHEF IVDDVSHPRK EEIYKMLAEI NQQLKIAGYV
510 520 530 540 550
AEITSELHNL ESEEEKGYAL RYHSEKLAIA FGILVTPPGT TIRVTKNLRT
560 570 580 590
CVDCHNFAKF VSDVYDRIVI VRDRSRFHHF KGGSCSCNDF W
Length:591
Mass (Da):66,326
Last modified:May 1, 2000 - v1
Checksum:iCCF9D560806E20B0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132955 Genomic DNA. Translation: CAB61979.1.
CP002686 Genomic DNA. Translation: AEE78293.1.
AK221462 mRNA. Translation: BAD94558.1.
PIRiT45713.
RefSeqiNP_190337.1. NM_114621.3.
UniGeneiAt.49647.

Genome annotation databases

EnsemblPlantsiAT3G47530.1; AT3G47530.1; AT3G47530.
GeneIDi823907.
GrameneiAT3G47530.1; AT3G47530.1; AT3G47530.
KEGGiath:AT3G47530.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132955 Genomic DNA. Translation: CAB61979.1.
CP002686 Genomic DNA. Translation: AEE78293.1.
AK221462 mRNA. Translation: BAD94558.1.
PIRiT45713.
RefSeqiNP_190337.1. NM_114621.3.
UniGeneiAt.49647.

3D structure databases

ProteinModelPortaliQ9SN85.
SMRiQ9SN85.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G47530.1.

Proteomic databases

PaxDbiQ9SN85.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G47530.1; AT3G47530.1; AT3G47530.
GeneIDi823907.
GrameneiAT3G47530.1; AT3G47530.1; AT3G47530.
KEGGiath:AT3G47530.

Organism-specific databases

TAIRiAT3G47530.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9SN85.
OMAiDSTIWRT.
OrthoDBiEOG093609XY.
PhylomeDBiQ9SN85.

Miscellaneous databases

PROiQ9SN85.

Gene expression databases

GenevisibleiQ9SN85. AT.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR032867. DYW_dom.
IPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF14432. DYW_deaminase. 1 hit.
PF01535. PPR. 2 hits.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 11 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP267_ARATH
AccessioniPrimary (citable) accession number: Q9SN85
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 2000
Last modified: November 30, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.