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Protein

Ras-related protein RABA1d

Gene

RABA1D

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

Intracellular vesicle trafficking and protein transport.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi20 – 27GTPBy similarity8
Nucleotide bindingi68 – 72GTPBy similarity5
Nucleotide bindingi126 – 129GTPBy similarity4
Nucleotide bindingi156 – 157GTPBy similarity2

GO - Molecular functioni

GO - Biological processi

  • cell wall biogenesis Source: TAIR
  • protein transport Source: UniProtKB-KW

Keywordsi

Biological processProtein transport, Transport
LigandGTP-binding, Nucleotide-binding

Enzyme and pathway databases

ReactomeiR-ATH-5620916. VxPx cargo-targeting to cilium.
R-ATH-8873719. RAB geranylgeranylation.

Names & Taxonomyi

Protein namesi
Recommended name:
Ras-related protein RABA1d
Short name:
AtRABA1d
Alternative name(s):
Ras-related protein Rab11B
Short name:
AtRab11B
Ras-related protein SGBP
Short name:
AthSGBP
Gene namesi
Name:RABA1D
Synonyms:RAB11B, SGBP
Ordered Locus Names:At4g18800
ORF Names:F28A21.210
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G18800.
TAIRilocus:2124092. AT4G18800.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Endosome, Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004073351 – 214Ras-related protein RABA1dAdd BLAST214

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi211S-geranylgeranyl cysteineBy similarity1
Lipidationi212S-geranylgeranyl cysteineBy similarity1

Keywords - PTMi

Lipoprotein, Prenylation

Proteomic databases

PaxDbiQ9SN35.
PRIDEiQ9SN35.

PTM databases

iPTMnetiQ9SN35.

Expressioni

Tissue specificityi

Expressed in the vesicle-rich apical dome of growing root hairs.1 Publication

Gene expression databases

ExpressionAtlasiQ9SN35. baseline and differential.
GenevisibleiQ9SN35. AT.

Interactioni

Protein-protein interaction databases

BioGridi12907. 4 interactors.
IntActiQ9SN35. 2 interactors.
STRINGi3702.AT4G18800.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SN35.
SMRiQ9SN35.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi42 – 50Effector regionBy similarity9

Sequence similaritiesi

Belongs to the small GTPase superfamily. Rab family.Curated

Phylogenomic databases

eggNOGiKOG0087. Eukaryota.
COG1100. LUCA.
HOGENOMiHOG000233968.
InParanoidiQ9SN35.
OMAiISKHSTF.
OrthoDBiEOG09360M9A.
PhylomeDBiQ9SN35.

Family and domain databases

InterProiView protein in InterPro
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR001806. Small_GTPase.
PfamiView protein in Pfam
PF00071. Ras. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiView protein in PROSITE
PS51419. RAB. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9SN35-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF
60 70 80 90 100
ATRSLNVNEK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
110 120 130 140 150
FENVERWLRE LRDHTDPNIV VMLVGNKSDL RHLVAVQTED AKSFAENESL
160 170 180 190 200
YFMETSALES TNVENAFSEV LTQIYHVVSK KAMEAGEDSG NVPSKGEKID
210
VDVSAVKKTG CCSN
Length:214
Mass (Da):23,870
Last modified:May 1, 2000 - v1
Checksum:iFF5EE36FDD333560
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL035526 Genomic DNA. Translation: CAB37465.1.
AL161549 Genomic DNA. Translation: CAB78882.1.
CP002687 Genomic DNA. Translation: AEE84091.1.
BT003901 mRNA. Translation: AAO41949.1.
BT004936 mRNA. Translation: AAO50469.1.
AK228509 mRNA. Translation: BAF00433.1.
PIRiT04872.
RefSeqiNP_193615.1. NM_117996.6.
UniGeneiAt.24230.

Genome annotation databases

EnsemblPlantsiAT4G18800.1; AT4G18800.1; AT4G18800.
GeneIDi827614.
GrameneiAT4G18800.1; AT4G18800.1; AT4G18800.
KEGGiath:AT4G18800.

Similar proteinsi

Entry informationi

Entry nameiRAA1D_ARATH
AccessioniPrimary (citable) accession number: Q9SN35
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 3, 2011
Last sequence update: May 1, 2000
Last modified: September 27, 2017
This is version 126 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families