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Q9SMQ6

- RAA4B_ARATH

UniProt

Q9SMQ6 - RAA4B_ARATH

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Protein

Ras-related protein RABA4b

Gene
RABA4B, GB3, RAB11G, At4g39990, T5J17.160
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Regulator of membrane trafficking. May be required for secretion of cell wall components in cells.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi24 – 318GTP By similarity
Nucleotide bindingi72 – 765GTP By similarity
Nucleotide bindingi130 – 1334GTP By similarity
Nucleotide bindingi160 – 1612GTP By similarity

GO - Molecular functioni

  1. GTP binding Source: UniProtKB-KW
  2. kinase binding Source: UniProtKB

GO - Biological processi

  1. endocytic recycling Source: TAIR
  2. protein transport Source: UniProtKB-KW
  3. small GTPase mediated signal transduction Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Keywords - Ligandi

GTP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ras-related protein RABA4b
Short name:
AtRABA4b
Alternative name(s):
Ras-related protein GB3
Short name:
AtGB3
Ras-related protein Rab11G
Short name:
AtRab11G
Gene namesi
Name:RABA4B
Synonyms:GB3, RAB11G
Ordered Locus Names:At4g39990
ORF Names:T5J17.160
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 4

Organism-specific databases

TAIRiAT4G39990.

Subcellular locationi

Early endosome membrane. Golgi apparatustrans-Golgi network membrane; Lipid-anchor Inferred 1 Publication

GO - Cellular componenti

  1. early endosome membrane Source: UniProtKB
  2. plasma membrane Source: TAIR
  3. trans-Golgi network membrane Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Endosome, Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 224223Ras-related protein RABA4bPRO_0000407345Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei2 – 21N-acetylalanine1 Publication
Lipidationi220 – 2201S-geranylgeranyl cysteine By similarity
Lipidationi221 – 2211S-geranylgeranyl cysteine By similarity

Keywords - PTMi

Acetylation, Lipoprotein, Prenylation

Proteomic databases

PaxDbiQ9SMQ6.
PRIDEiQ9SMQ6.

Expressioni

Tissue specificityi

Expressed in roots, stems, leaves and flowers. Expressed in tips of growing root hair cells.1 Publication

Gene expression databases

GenevestigatoriQ9SMQ6.

Interactioni

Protein-protein interaction databases

BioGridi15440. 1 interaction.
IntActiQ9SMQ6. 1 interaction.
STRINGi3702.AT4G39990.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ9SMQ6.
SMRiQ9SMQ6. Positions 15-179.

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi46 – 549Effector region By similarity

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1100.
HOGENOMiHOG000233968.
InParanoidiQ9SMQ6.
OMAiFEHIPRW.
PhylomeDBiQ9SMQ6.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR001806. Small_GTPase.
IPR003579. Small_GTPase_Rab_type.
[Graphical view]
PfamiPF00071. Ras. 1 hit.
[Graphical view]
PRINTSiPR00449. RASTRNSFRMNG.
SMARTiSM00175. RAB. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS51419. RAB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SMQ6-1 [UniParc]FASTAAdd to Basket

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MAGGGGYGGA SGKVDYVFKV VLIGDSAVGK SQLLARFARD EFSMDSKATI    50
GVEFQTRTLS IEQKSIKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDMT 100
KRETFEHIPR WLEELRAHAD KNIVIILIGN KSDLEDQRAV PTEDAKEFAE 150
KEGLFFLETS ALNATNVENS FNTLMTQIYN TVNKKNLASE GDSNNPGSLA 200
GKKILIPGSG QEIPAKTSTC CTSS 224
Length:224
Mass (Da):24,407
Last modified:May 1, 2000 - v1
Checksum:iFA2C5E5A0DC2025B
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti191 – 1911G → C in AAA87884. 1 Publication
Sequence conflicti208 – 2081G → A in AAM66946. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U46926 mRNA. Translation: AAA87884.1.
AL035708 Genomic DNA. Translation: CAB38912.1.
AL161596 Genomic DNA. Translation: CAB80662.1.
CP002687 Genomic DNA. Translation: AEE87150.1.
AY072448 mRNA. Translation: AAL62440.1.
AY128914 mRNA. Translation: AAM91314.1.
AY088624 mRNA. Translation: AAM66946.1.
PIRiT06105.
RefSeqiNP_195709.1. NM_120163.4.
UniGeneiAt.1649.
At.48966.

Genome annotation databases

EnsemblPlantsiAT4G39990.1; AT4G39990.1; AT4G39990.
GeneIDi830160.
KEGGiath:AT4G39990.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U46926 mRNA. Translation: AAA87884.1 .
AL035708 Genomic DNA. Translation: CAB38912.1 .
AL161596 Genomic DNA. Translation: CAB80662.1 .
CP002687 Genomic DNA. Translation: AEE87150.1 .
AY072448 mRNA. Translation: AAL62440.1 .
AY128914 mRNA. Translation: AAM91314.1 .
AY088624 mRNA. Translation: AAM66946.1 .
PIRi T06105.
RefSeqi NP_195709.1. NM_120163.4.
UniGenei At.1649.
At.48966.

3D structure databases

ProteinModelPortali Q9SMQ6.
SMRi Q9SMQ6. Positions 15-179.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 15440. 1 interaction.
IntActi Q9SMQ6. 1 interaction.
STRINGi 3702.AT4G39990.1-P.

Proteomic databases

PaxDbi Q9SMQ6.
PRIDEi Q9SMQ6.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT4G39990.1 ; AT4G39990.1 ; AT4G39990 .
GeneIDi 830160.
KEGGi ath:AT4G39990.

Organism-specific databases

TAIRi AT4G39990.

Phylogenomic databases

eggNOGi COG1100.
HOGENOMi HOG000233968.
InParanoidi Q9SMQ6.
OMAi FEHIPRW.
PhylomeDBi Q9SMQ6.

Gene expression databases

Genevestigatori Q9SMQ6.

Family and domain databases

Gene3Di 3.40.50.300. 1 hit.
InterProi IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR001806. Small_GTPase.
IPR003579. Small_GTPase_Rab_type.
[Graphical view ]
Pfami PF00071. Ras. 1 hit.
[Graphical view ]
PRINTSi PR00449. RASTRNSFRMNG.
SMARTi SM00175. RAB. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR00231. small_GTP. 1 hit.
PROSITEi PS51419. RAB. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Identification and isoprenylation of plant GTP-binding proteins."
    Biermann B.J., Randall S.K., Crowell D.N.
    Plant Mol. Biol. 31:1021-1028(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
    Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
    , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
    Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  6. "Analysis of the small GTPase gene superfamily of Arabidopsis."
    Vernoud V., Horton A.C., Yang Z., Nielsen E.
    Plant Physiol. 131:1191-1208(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.
  7. "The Arabidopsis Rab GTPase RabA4b localizes to the tips of growing root hair cells."
    Preuss M.L., Serna J., Falbel T.G., Bednarek S.Y., Nielsen E.
    Plant Cell 16:1589-1603(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY.
  8. "Electron tomography of RabA4b- and PI-4K?1-labeled trans Golgi network compartments in Arabidopsis."
    Kang B.H., Nielsen E., Preuss M.L., Mastronarde D., Staehelin L.A.
    Traffic 12:313-329(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION.
  9. "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features."
    Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C., Meinnel T., Giglione C.
    Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS], CLEAVAGE OF INITIATOR METHIONINE [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiRAA4B_ARATH
AccessioniPrimary (citable) accession number: Q9SMQ6
Secondary accession number(s): Q38923, Q8L958
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 3, 2011
Last sequence update: May 1, 2000
Last modified: July 9, 2014
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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