Q9SM08 (Q9SM08_ARATH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
F19C14.2 protein EMBL AAF82251.1

Submitted name:
Glycosyl hydrolase-like prottein 10 EMBL AEE33542.1
Submitted name:
RXF12 protein EMBL BAA88262.1
Submitted name:
Xylan endohydrolase EMBL BAB83869.1

Gene names

Name:	RXF12 EMBL BAA88262.1
Synonyms:	F19C14.2 EMBL AAF82251.1
Ordered Locus Names:	At1g58370 TAIR At1g58370
ORF Names:	AT1G58370 EMBL AEE33542.1

Organism

Arabidopsis thaliana (Mouse-ear cress) EMBL BAA88262.1

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	917 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 10 (cellulase F) family. RuleBase RU003432

Ontologies

Keywords
Molecular function	Glycosidase RuleBase RU003432 Hydrolase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cell wall Inferred from direct assay. Source: TAIR
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro endo-1,4-beta-xylanase activity Inferred from direct assay. Source: TAIR
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9SM08 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: 64DDCB810B4FBD75	FASTA	917	102,459
	10 20 30 40 50 60 MEVSRKDNEE PEKQNNNNVA SIIGSDRTNV IVNHDFSSGM HSWHPNCCEA FVVTAESNVS 70 80 90 100 110 120 HGVLDPSKCG SYVVVKNRKE TWQGLEQDIT NRVKPCSLYK VSATVAVSGP VHGLVEVMAT 130 140 150 160 170 180 LKLESQQSQT NYQFIAKTCV FKEKWVRLEG MFSLPSLPEK VVFYLEGPSP GIDLLIQSVT 190 200 210 220 230 240 IHRESEPELE RVTAEDETIV VNPNFEDGLN NWSGRSCKIV LHDSMADGKI VPESGKVFAS 250 260 270 280 290 300 ATERTQNWNG IQQEITGKVQ RKRVYEATAV VRIYGNNVTT ATVQATLWVQ NPNQRDQYIG 310 320 330 340 350 360 ISTVQATDKE WIHLKGKFLL NGSASRVVIY IEGPPPGTDI LLNSLTVKHA EKIPPSPPPS 370 380 390 400 410 420 IENPAFGVNI LTNSHLSDDT TNGWFSLGNC TLSVAEGSPR ILPPMARDSL GAHERLSGRY 430 440 450 460 470 480 ILVTNRTQTW MGPAQMITDK LKLFLTYQIS VWVKVGSGIN SPQNVNVALG IDSQWVNGGQ 490 500 510 520 530 540 VEINDDRWHE IGGSFRIEKN PSKALVYVQG PSSGIDLMVA GLQIFPVDRL ARIKHLKRQC 550 560 570 580 590 600 DKIRKRDVIL KFAGVDSSKF SGASVRVRQI RNSFPVGTCI SRSNIDNEDF VDFFLKNFNW 610 620 630 640 650 660 AVFANELKWY WTEPEQGKLN YQDADDMLNL CSSNNIETRG HCIFWEVQAT VQQWIQNMNQ 670 680 690 700 710 720 TDLNNAVQNR LTDLLNRYKG KFKHYDVNNE MLHGSFYQDK LGKDIRVNMF KTAHQLDPSA 730 740 750 760 770 780 TLFVNDYHIE DGCDPKSCPE KYTEQILDLQ EKGAPVGGIG IQGHIDSPVG PIVCSALDKL 790 800 810 820 830 840 GILGLPIWFT ELDVSSVNEH IRADDLEVMM WEAFGHPAVE GIMLWGFWEL FMSRDNSHLV 850 860 870 880 890 900 NAEGDVNEAG KRFLAVKKDW LSHANGHIDQ NGAFPFRGYS GNYAVEVITT SSSKVLKTFG 910 VDKEDSSQVI TVDLQGL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Isolation and analysis of cDNA within a 300 kb Arabidopsis thaliana genomic region located around the 100 map unit of chromosome 1." Kato A., Suzuki M., Kuwahara A., Ooe H., Higano-Inaba K., Komeda Y. Gene 239:309-316(1999) [PubMed: 10548732] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed: 11130712] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[3]	"An RNA-binding protein, AtRBP1, is expressed in actively proliferative regions in Arabidopsis thaliana." Suzuki M., Kato A., Komeda Y. Plant Cell Physiol. 41:282-288(2000) [PubMed: 10805591] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[4]	"Long repeat sequence within a genomic region located around the 100 map unit of chromosome 1 in Arabidopsis thaliana." Kato A., Komeda Y. Submitted (JAN-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[5]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[6]	"An xylanase, AtXyn1, is predominantly expressed in vascular bundles, and four putative xylanase genes were identified in the Arabidopsis thaliana genome." Suzuki M., Kato A., Nagata N., Komeda Y. Submitted (JAN-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[7]	"The sequence of BAC F19C14 from Arabidopsis thaliana chromosome 1." Liu S.X., Sakano H., Yu G., Lee J.M., Lenz C., Pham P., Toriumi M., Chin C., Chiou J., Choi E., Chung M., Gonzalez A., Howng B., Liu A., Vaysberg M., Altafi H., Brooks S., Buehler E. , Chao Q., Conn L., Conway A.B., Hansen N.F., Johnson-Hopson C., Khan S., Kim C., Lam B., Miranda M., Nguyen M., Palm C.J., Shinn P., Southwick A., Davis R.W., Ecker J.R., Federspiel N.A., Theologis A. Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC008051 Genomic DNA. Translation: AAF82251.1. CP002684 Genomic DNA. Translation: AEE33542.1. AB008015 mRNA. Translation: BAA88262.1. AB077822 Genomic DNA. Translation: BAB83869.1.
IPI	IPI00533484.
PIR	T52467.
RefSeq	NP_176133.1. NM_104617.3.
UniGene	At.440.
3D structure databases
ProteinModelPortal	Q9SM08.
SMR	Q9SM08. Positions 569-859.
ModBase	Search...
Protein-protein interaction databases
STRING	Q9SM08.
Protein family/group databases
CAZy	CBM22. Carbohydrate-Binding Module Family 22. GH10. Glycoside Hydrolase Family 10.
Proteomic databases
PRIDE	Q9SM08.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT1G58370.1; AT1G58370.1; AT1G58370.
GeneID	842206.
KEGG	ath:AT1G58370.
NMPDR	fig|3702.1.peg.5298.
Organism-specific databases
TAIR	At1g58370.
Phylogenomic databases
GeneTree	EPGT00050000010308.
InParanoid	Q9SM08.
OMA	PIVCSAL.
PhylomeDB	Q9SM08.
ProtClustDB	CLSN2679405.
Gene expression databases
Genevestigator	Q9SM08.
Family and domain databases
InterPro	IPR003305. CenC_carb-bd. IPR008979. Galactose-bd-like. IPR001000. Glyco_hydro_10. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
Gene3D	G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
Pfam	PF02018. CBM_4_9. 3 hits. PF00331. Glyco_hydro_10. 1 hit. [Graphical view]
PRINTS	PR00134. GLHYDRLASE10.
SMART	SM00633. Glyco_10. 1 hit. [Graphical view]
SUPFAM	SSF49785. Gal_bind_like. 3 hits. SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q9SM08_ARATH

Accession

Primary (citable) accession number: Q9SM08

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	January 25, 2012
This is version 77 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)