Q9SKZ3 (RS122_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
40S ribosomal protein S12-2

Gene names

Name:	RPS12C
Ordered Locus Names:	At2g32060
ORF Names:	F22D22.19

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	144 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S12e family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	cytosolic small ribosomal subunit Inferred from direct assay. Source: TAIR nucleus Inferred from direct assay. Source: TAIR
Molecular function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 144	144	40S ribosomal protein S12-2		PRO_0000122335

Sequences

	Sequence		Length	Mass (Da)
	Q9SKZ3 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: 547C8C2C9AE84B4E	FASTA	144	15,329
	10 20 30 40 50 60 MSGDEAVAAP VVPPVAEAAV IPEDMDVSTA LELTVRKSRA YGGVVRGLHE SAKLIEKRNA 70 80 90 100 110 120 QLCVLAEDCN QPDYVKLVKA LCADHSIKLL TVPSAKTLGE WAGLCKIDSE GNARKVVGCS 130 140 CLVIKDFGEE TTALNIVKKH LDSN

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana." Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. , Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C. Nature 402:761-768(1999) [PubMed: 10617197] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[3]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[4]	"Full-length cDNA from Arabidopsis thaliana." Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A. Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
[5]	"The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome." Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J. Plant Physiol. 127:398-415(2001) [PubMed: 11598216] [Abstract] Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC006223 Genomic DNA. Translation: AAD15398.1. CP002685 Genomic DNA. Translation: AEC08627.1. CP002685 Genomic DNA. Translation: AEC08628.1. CP002685 Genomic DNA. Translation: AEC08629.1. AY050324 mRNA. Translation: AAK91341.1. AY133636 mRNA. Translation: AAM91466.1. AY085161 mRNA. Translation: AAM61714.1.
IPI	IPI00521168.
PIR	E84728.
RefSeq	NP_180766.1. NM_128766.5. NP_850180.1. NM_179849.3. NP_850181.1. NM_179850.1.
UniGene	At.20560.
3D structure databases
ProteinModelPortal	Q9SKZ3.
SMR	Q9SKZ3. Positions 23-143.
ModBase	Search...
Protein-protein interaction databases
STRING	Q9SKZ3.
Proteomic databases
PRIDE	Q9SKZ3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT2G32060.1; AT2G32060.1; AT2G32060. AT2G32060.2; AT2G32060.2; AT2G32060. AT2G32060.3; AT2G32060.3; AT2G32060.
GeneID	817766.
GenomeReviews	Gene locus AT2G32060 in contig CT485783_GR.
KEGG	ath:AT2G32060.
NMPDR	fig|3702.1.peg.10269.
Organism-specific databases
GeneFarm	437. 63.
TAIR	At2g32060.
Phylogenomic databases
eggNOG	KOG3406.
GeneTree	EPGT00050000017915.
HOGENOM	HBG319268.
InParanoid	Q9SKZ3.
OMA	CADHSIK.
PhylomeDB	Q9SKZ3.
ProtClustDB	CLSN2679527.
Gene expression databases
ArrayExpress	Q9SKZ3.
Genevestigator	Q9SKZ3.
GermOnline	AT2G32060. Arabidopsis thaliana.
Family and domain databases
InterPro	IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45. IPR000530. Ribosomal_S12e. [Graphical view]
KO	K02951.
PANTHER	PTHR11843. Ribosomal_S12e. 1 hit.
Pfam	PF01248. Ribosomal_L7Ae. 1 hit. [Graphical view]
PRINTS	PR00972. RIBSOMALS12E.
PROSITE	PS01189. RIBOSOMAL_S12E. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS122_ARATH

Accession

Primary (citable) accession number: Q9SKZ3

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 8, 2000
Last sequence update:	May 1, 2000
Last modified:	November 16, 2011
This is version 84 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program