Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Pentatricopeptide repeat-containing protein At2g21090

Gene

PCMP-E48

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g21090
Gene namesi
Name:PCMP-E48
Ordered Locus Names:At2g21090
ORF Names:F26H11.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G21090.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003560261 – 597Pentatricopeptide repeat-containing protein At2g21090Add BLAST597

Proteomic databases

PaxDbiQ9SKQ4.

Expressioni

Gene expression databases

GenevisibleiQ9SKQ4. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G21090.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SKQ4.
SMRiQ9SKQ4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati45 – 79PPR 1Add BLAST35
Repeati81 – 111PPR 2Add BLAST31
Repeati112 – 142PPR 3Add BLAST31
Repeati143 – 177PPR 4Add BLAST35
Repeati178 – 212PPR 5Add BLAST35
Repeati213 – 243PPR 6Add BLAST31
Repeati244 – 274PPR 7Add BLAST31
Repeati275 – 309PPR 8Add BLAST35
Repeati310 – 344PPR 9Add BLAST35
Repeati345 – 375PPR 10Add BLAST31
Repeati377 – 411PPR 11Add BLAST35
Repeati412 – 447PPR 12Add BLAST36
Repeati448 – 478PPR 13Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni483 – 558Type E motifAdd BLAST76
Regioni559 – 591Type E(+) motifAdd BLAST33

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 13 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9SKQ4.
OMAiTACVKSR.
OrthoDBiEOG09360A2S.
PhylomeDBiQ9SKQ4.

Family and domain databases

Gene3Di1.25.40.10. 4 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 2 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 3 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 7 hits.
PROSITEiPS51375. PPR. 14 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SKQ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPISNPRKRP ICVAQSFLSK HATKAELSQA VSRLESLTQQ GIRLPFDLLA
60 70 80 90 100
SLLQQCGDTK SLKQGKWIHR HLKITGFKRP NTLLSNHLIG MYMKCGKPID
110 120 130 140 150
ACKVFDQMHL RNLYSWNNMV SGYVKSGMLV RARVVFDSMP ERDVVSWNTM
160 170 180 190 200
VIGYAQDGNL HEALWFYKEF RRSGIKFNEF SFAGLLTACV KSRQLQLNRQ
210 220 230 240 250
AHGQVLVAGF LSNVVLSCSI IDAYAKCGQM ESAKRCFDEM TVKDIHIWTT
260 270 280 290 300
LISGYAKLGD MEAAEKLFCE MPEKNPVSWT ALIAGYVRQG SGNRALDLFR
310 320 330 340 350
KMIALGVKPE QFTFSSCLCA SASIASLRHG KEIHGYMIRT NVRPNAIVIS
360 370 380 390 400
SLIDMYSKSG SLEASERVFR ICDDKHDCVF WNTMISALAQ HGLGHKALRM
410 420 430 440 450
LDDMIKFRVQ PNRTTLVVIL NACSHSGLVE EGLRWFESMT VQHGIVPDQE
460 470 480 490 500
HYACLIDLLG RAGCFKELMR KIEEMPFEPD KHIWNAILGV CRIHGNEELG
510 520 530 540 550
KKAADELIKL DPESSAPYIL LSSIYADHGK WELVEKLRGV MKKRRVNKEK
560 570 580 590
AVSWIEIEKK VEAFTVSDGS HAHARKEEIY FILHNLAAVI EEEASRT
Length:597
Mass (Da):67,518
Last modified:May 1, 2000 - v1
Checksum:iDD3AAF8713778FFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006264 Genomic DNA. Translation: AAD29807.1.
CP002685 Genomic DNA. Translation: AEC07122.1.
BX820424 mRNA. No translation available.
PIRiA84597.
RefSeqiNP_179705.1. NM_127679.4.
UniGeneiAt.49547.

Genome annotation databases

EnsemblPlantsiAT2G21090.1; AT2G21090.1; AT2G21090.
GeneIDi816644.
GrameneiAT2G21090.1; AT2G21090.1; AT2G21090.
KEGGiath:AT2G21090.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006264 Genomic DNA. Translation: AAD29807.1.
CP002685 Genomic DNA. Translation: AEC07122.1.
BX820424 mRNA. No translation available.
PIRiA84597.
RefSeqiNP_179705.1. NM_127679.4.
UniGeneiAt.49547.

3D structure databases

ProteinModelPortaliQ9SKQ4.
SMRiQ9SKQ4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G21090.1.

Proteomic databases

PaxDbiQ9SKQ4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G21090.1; AT2G21090.1; AT2G21090.
GeneIDi816644.
GrameneiAT2G21090.1; AT2G21090.1; AT2G21090.
KEGGiath:AT2G21090.

Organism-specific databases

TAIRiAT2G21090.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9SKQ4.
OMAiTACVKSR.
OrthoDBiEOG09360A2S.
PhylomeDBiQ9SKQ4.

Miscellaneous databases

PROiQ9SKQ4.

Gene expression databases

GenevisibleiQ9SKQ4. AT.

Family and domain databases

Gene3Di1.25.40.10. 4 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 2 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 3 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 7 hits.
PROSITEiPS51375. PPR. 14 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP167_ARATH
AccessioniPrimary (citable) accession number: Q9SKQ4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 2000
Last modified: November 30, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.