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Protein

Pentatricopeptide repeat-containing protein At2g21090

Gene

PCMP-E48

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g21090
Gene namesi
Name:PCMP-E48
Ordered Locus Names:At2g21090
ORF Names:F26H11.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G21090.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 597597Pentatricopeptide repeat-containing protein At2g21090PRO_0000356026Add
BLAST

Proteomic databases

PaxDbiQ9SKQ4.
PRIDEiQ9SKQ4.

Expressioni

Gene expression databases

GenevisibleiQ9SKQ4. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G21090.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SKQ4.
SMRiQ9SKQ4. Positions 27-543.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati45 – 7935PPR 1Add
BLAST
Repeati81 – 11131PPR 2Add
BLAST
Repeati112 – 14231PPR 3Add
BLAST
Repeati143 – 17735PPR 4Add
BLAST
Repeati178 – 21235PPR 5Add
BLAST
Repeati213 – 24331PPR 6Add
BLAST
Repeati244 – 27431PPR 7Add
BLAST
Repeati275 – 30935PPR 8Add
BLAST
Repeati310 – 34435PPR 9Add
BLAST
Repeati345 – 37531PPR 10Add
BLAST
Repeati377 – 41135PPR 11Add
BLAST
Repeati412 – 44736PPR 12Add
BLAST
Repeati448 – 47831PPR 13Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni483 – 55876Type E motifAdd
BLAST
Regioni559 – 59133Type E(+) motifAdd
BLAST

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 13 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9SKQ4.
OMAiTACVKSR.
OrthoDBiEOG09360A2S.
PhylomeDBiQ9SKQ4.

Family and domain databases

Gene3Di1.25.40.10. 4 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 2 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 3 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 7 hits.
PROSITEiPS51375. PPR. 14 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SKQ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPISNPRKRP ICVAQSFLSK HATKAELSQA VSRLESLTQQ GIRLPFDLLA
60 70 80 90 100
SLLQQCGDTK SLKQGKWIHR HLKITGFKRP NTLLSNHLIG MYMKCGKPID
110 120 130 140 150
ACKVFDQMHL RNLYSWNNMV SGYVKSGMLV RARVVFDSMP ERDVVSWNTM
160 170 180 190 200
VIGYAQDGNL HEALWFYKEF RRSGIKFNEF SFAGLLTACV KSRQLQLNRQ
210 220 230 240 250
AHGQVLVAGF LSNVVLSCSI IDAYAKCGQM ESAKRCFDEM TVKDIHIWTT
260 270 280 290 300
LISGYAKLGD MEAAEKLFCE MPEKNPVSWT ALIAGYVRQG SGNRALDLFR
310 320 330 340 350
KMIALGVKPE QFTFSSCLCA SASIASLRHG KEIHGYMIRT NVRPNAIVIS
360 370 380 390 400
SLIDMYSKSG SLEASERVFR ICDDKHDCVF WNTMISALAQ HGLGHKALRM
410 420 430 440 450
LDDMIKFRVQ PNRTTLVVIL NACSHSGLVE EGLRWFESMT VQHGIVPDQE
460 470 480 490 500
HYACLIDLLG RAGCFKELMR KIEEMPFEPD KHIWNAILGV CRIHGNEELG
510 520 530 540 550
KKAADELIKL DPESSAPYIL LSSIYADHGK WELVEKLRGV MKKRRVNKEK
560 570 580 590
AVSWIEIEKK VEAFTVSDGS HAHARKEEIY FILHNLAAVI EEEASRT
Length:597
Mass (Da):67,518
Last modified:May 1, 2000 - v1
Checksum:iDD3AAF8713778FFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006264 Genomic DNA. Translation: AAD29807.1.
CP002685 Genomic DNA. Translation: AEC07122.1.
BX820424 mRNA. No translation available.
PIRiA84597.
RefSeqiNP_179705.1. NM_127679.3.
UniGeneiAt.49547.

Genome annotation databases

EnsemblPlantsiAT2G21090.1; AT2G21090.1; AT2G21090.
GeneIDi816644.
GrameneiAT2G21090.1; AT2G21090.1; AT2G21090.
KEGGiath:AT2G21090.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006264 Genomic DNA. Translation: AAD29807.1.
CP002685 Genomic DNA. Translation: AEC07122.1.
BX820424 mRNA. No translation available.
PIRiA84597.
RefSeqiNP_179705.1. NM_127679.3.
UniGeneiAt.49547.

3D structure databases

ProteinModelPortaliQ9SKQ4.
SMRiQ9SKQ4. Positions 27-543.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G21090.1.

Proteomic databases

PaxDbiQ9SKQ4.
PRIDEiQ9SKQ4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G21090.1; AT2G21090.1; AT2G21090.
GeneIDi816644.
GrameneiAT2G21090.1; AT2G21090.1; AT2G21090.
KEGGiath:AT2G21090.

Organism-specific databases

TAIRiAT2G21090.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237569.
InParanoidiQ9SKQ4.
OMAiTACVKSR.
OrthoDBiEOG09360A2S.
PhylomeDBiQ9SKQ4.

Miscellaneous databases

PROiQ9SKQ4.

Gene expression databases

GenevisibleiQ9SKQ4. AT.

Family and domain databases

Gene3Di1.25.40.10. 4 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 2 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 3 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 7 hits.
PROSITEiPS51375. PPR. 14 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP167_ARATH
AccessioniPrimary (citable) accession number: Q9SKQ4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 2000
Last modified: September 7, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.