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Protein

Pentatricopeptide repeat-containing protein At2g21090

Gene

PCMP-E48

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g21090
Gene namesi
Name:PCMP-E48
Ordered Locus Names:At2g21090
ORF Names:F26H11.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G21090
TAIRilocus:2047017 AT2G21090

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003560261 – 597Pentatricopeptide repeat-containing protein At2g21090Add BLAST597

Proteomic databases

PaxDbiQ9SKQ4

Expressioni

Gene expression databases

ExpressionAtlasiQ9SKQ4 baseline and differential
GenevisibleiQ9SKQ4 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G21090.1

Structurei

3D structure databases

ProteinModelPortaliQ9SKQ4
SMRiQ9SKQ4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati45 – 79PPR 1Add BLAST35
Repeati81 – 111PPR 2Add BLAST31
Repeati112 – 142PPR 3Add BLAST31
Repeati143 – 177PPR 4Add BLAST35
Repeati178 – 212PPR 5Add BLAST35
Repeati213 – 243PPR 6Add BLAST31
Repeati244 – 274PPR 7Add BLAST31
Repeati275 – 309PPR 8Add BLAST35
Repeati310 – 344PPR 9Add BLAST35
Repeati345 – 375PPR 10Add BLAST31
Repeati377 – 411PPR 11Add BLAST35
Repeati412 – 447PPR 12Add BLAST36
Repeati448 – 478PPR 13Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni483 – 558Type E motifAdd BLAST76
Regioni559 – 591Type E(+) motifAdd BLAST33

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237569
InParanoidiQ9SKQ4
OMAiEMPEKNP
OrthoDBiEOG09360A2S
PhylomeDBiQ9SKQ4

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 2 hits
PF12854 PPR_1, 1 hit
PF13041 PPR_2, 3 hits
TIGRFAMsiTIGR00756 PPR, 7 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 14 hits

Sequencei

Sequence statusi: Complete.

Q9SKQ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPISNPRKRP ICVAQSFLSK HATKAELSQA VSRLESLTQQ GIRLPFDLLA
60 70 80 90 100
SLLQQCGDTK SLKQGKWIHR HLKITGFKRP NTLLSNHLIG MYMKCGKPID
110 120 130 140 150
ACKVFDQMHL RNLYSWNNMV SGYVKSGMLV RARVVFDSMP ERDVVSWNTM
160 170 180 190 200
VIGYAQDGNL HEALWFYKEF RRSGIKFNEF SFAGLLTACV KSRQLQLNRQ
210 220 230 240 250
AHGQVLVAGF LSNVVLSCSI IDAYAKCGQM ESAKRCFDEM TVKDIHIWTT
260 270 280 290 300
LISGYAKLGD MEAAEKLFCE MPEKNPVSWT ALIAGYVRQG SGNRALDLFR
310 320 330 340 350
KMIALGVKPE QFTFSSCLCA SASIASLRHG KEIHGYMIRT NVRPNAIVIS
360 370 380 390 400
SLIDMYSKSG SLEASERVFR ICDDKHDCVF WNTMISALAQ HGLGHKALRM
410 420 430 440 450
LDDMIKFRVQ PNRTTLVVIL NACSHSGLVE EGLRWFESMT VQHGIVPDQE
460 470 480 490 500
HYACLIDLLG RAGCFKELMR KIEEMPFEPD KHIWNAILGV CRIHGNEELG
510 520 530 540 550
KKAADELIKL DPESSAPYIL LSSIYADHGK WELVEKLRGV MKKRRVNKEK
560 570 580 590
AVSWIEIEKK VEAFTVSDGS HAHARKEEIY FILHNLAAVI EEEASRT
Length:597
Mass (Da):67,518
Last modified:May 1, 2000 - v1
Checksum:iDD3AAF8713778FFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006264 Genomic DNA Translation: AAD29807.1
CP002685 Genomic DNA Translation: AEC07122.1
BX820424 mRNA No translation available.
PIRiA84597
RefSeqiNP_179705.1, NM_127679.4
UniGeneiAt.49547

Genome annotation databases

EnsemblPlantsiAT2G21090.1; AT2G21090.1; AT2G21090
GeneIDi816644
GrameneiAT2G21090.1; AT2G21090.1; AT2G21090
KEGGiath:AT2G21090

Similar proteinsi

Entry informationi

Entry nameiPP167_ARATH
AccessioniPrimary (citable) accession number: Q9SKQ4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 98 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health