Unreviewed, UniProtKB/TrEMBL Q9SKN2 (Q9SKN2_ARATH)

Names and origin

Protein names

Submitted name:
    Expressed protein EMBL AAD20688.1
Submitted name:
    Putative uncharacterized protein At2g28380 EMBL AAL33811.1

Gene names

Ordered Locus Names:

At2g28380 EMBL AAD20688.1 TAIR At2g28380

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	434 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	cytoplasm Inferred from direct assay. Source: TAIR
Molecular function	double-stranded RNA binding Inferred from electronic annotation. Source: InterPro protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9SKN2-1 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: 72DE2AC3C567C16C	FASTA	434	47,440
	10 20 30 40 50 60 MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA 70 80 90 100 110 120 AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG APLPRYTTFR SGLGHQPVFT 130 140 150 160 170 180 GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR 190 200 210 220 230 240 ALINYRIKEN IGTGSSSSAP VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS 250 260 270 280 290 300 RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV 310 320 330 340 350 360 FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV 370 380 390 400 410 420 KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD CEKTASKETE RAEFKDSSKG 430 EPETARERLE NLKI

References

[1]	Lin X., Kaul S., Shea T.P., Fujii C.Y., Shen M., VanAken S.E., Barnstead M.E., Mason T.M., Bowman C.L., Ronning C.M., Benito M.-I., Carrera A.J., Creasy T.H., Buell C.R., Town C.D., Nierman W.C., Fraser C.M., Venter J.C. Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	Town C.D., Kaul S. Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	"Arabidopsis Open Reading Frame (ORF) Clones." Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Etgu P., Lee J.M., Toriumi M., Yu G., Brooks S., Chao Q., Chen H., Karlin-Neumann G., Kim C., Lam B., Miranda M., Nguyen M., Palm C.J. , Shinn P., Southwick A., Davis R.W., Ecker J.R., Theologis A. Submitted (NOV-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[4]	"Arabidopsis Full Length cDNA Clones." Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K., Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T. , Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A. Submitted (MAY-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AC006283 Genomic DNA. Translation: AAD20688.1. AY034976 mRNA. Translation: AAK59481.1. AY062965 mRNA. Translation: AAL33811.1.
IPI	IPI00547657.
PIR	B84684.
RefSeq	NP_565672.1.
UniGene	At.13732
3D structure databases
ModBase	Search...
Protein-protein interaction databases
IntAct	Q9SKN2. 7 interactions.
Genome annotation databases
GeneID	817386.
GenomeReviews	Gene locus AT2G28380 in contig CT485783_GR.
KEGG	ath:AT2G28380.
NMPDR	fig|3702.1.peg.9889.
Organism-specific databases
TAIR	At2g28380.
Phylogenomic databases
OMA	Q9SKN2. FTGDPAK.
Gene expression databases
ArrayExpress	Q9SKN2.
Family and domain databases
InterPro	IPR001159. Ds-RNA_bd. IPR014720. dsRNA-bd-like. [Graphical view]
Gene3D	G3DSA:3.30.160.20. dsRNA-bd-like. 2 hits.
Pfam	PF00035. dsrm. 2 hits. [Graphical view]
SMART	SM00358. DSRM. 2 hits. [Graphical view]
PROSITE	PS50137. DS_RBD. 2 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9SKN2_ARATH

Accession

Primary (citable) accession number: Q9SKN2

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	June 16, 2009
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)