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Protein
Submitted name:

At2g21270

Gene

UFD1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  1. ubiquitin-dependent protein catabolic process Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
At2g21270Imported
Submitted name:
Putative ubiquitin fusion-degradation proteinImported
Submitted name:
Ubiquitin fusion degradation 1Imported
Gene namesi
Name:UFD1Imported
Ordered Locus Names:At2g21270Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G21270.

PTM / Processingi

Proteomic databases

PRIDEiQ9SJV0.

Expressioni

Gene expression databases

ExpressionAtlasiQ9SJV0. baseline and differential.
GenevestigatoriQ9SJV0.

Structurei

3D structure databases

ProteinModelPortaliQ9SJV0.
SMRiQ9SJV0. Positions 13-181.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK14016.
PhylomeDBiQ9SJV0.

Family and domain databases

InterProiIPR004854. UFD1.
[Graphical view]
PANTHERiPTHR12555. PTHR12555. 1 hit.
PfamiPF03152. UFD1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SJV0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFFDGYHYHG TTFEQSYRCY PASFIDKPQL ESGDKIIMPP SALDRLASLH
60 70 80 90 100
IDYPMLFELR NAGIERVTHC GVLEFIAEEG MIYMPYWMMQ NLLLQEGDIV
110 120 130 140 150
RVRNVTLPKG TYVKLQPHTT DFLDISNPKA ILETALRNYS CLTSGDSIMV
160 170 180 190 200
PYNNKKYFID IVETKPANAI SIIETDCEVD FAPPLDYKEP ERPTAPSAAK
210 220 230 240 250
GPAKAEEVVD EPEPKFNPFT GSGRRLDGRP LAYEPAPASS SKGKQPVVAN
260 270 280 290 300
GNGQSSVASS SEKATRAQGK LVFGANGNRA PKEAAPKVGA AKETKKEEQE
310
KKDEPKFQAF SGKKYSLRG
Length:319
Mass (Da):35,323
Last modified:June 1, 2002 - v2
Checksum:i5BE3F96661EE0967
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006841 Genomic DNA. Translation: AAD23675.2.
BT033134 mRNA. Translation: ACF28395.1.
CP002685 Genomic DNA. Translation: AEC07152.1.
CP002685 Genomic DNA. Translation: AEC07153.1.
AK226526 mRNA. Translation: BAE98665.1.
PIRiC84599.
RefSeqiNP_001031384.1. NM_001036307.1.
NP_565504.1. NM_127699.4.
UniGeneiAt.39582.

Genome annotation databases

EnsemblPlantsiAT2G21270.1; AT2G21270.1; AT2G21270.
AT2G21270.2; AT2G21270.2; AT2G21270.
GeneIDi816666.
KEGGiath:AT2G21270.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006841 Genomic DNA. Translation: AAD23675.2.
BT033134 mRNA. Translation: ACF28395.1.
CP002685 Genomic DNA. Translation: AEC07152.1.
CP002685 Genomic DNA. Translation: AEC07153.1.
AK226526 mRNA. Translation: BAE98665.1.
PIRiC84599.
RefSeqiNP_001031384.1. NM_001036307.1.
NP_565504.1. NM_127699.4.
UniGeneiAt.39582.

3D structure databases

ProteinModelPortaliQ9SJV0.
SMRiQ9SJV0. Positions 13-181.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ9SJV0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G21270.1; AT2G21270.1; AT2G21270.
AT2G21270.2; AT2G21270.2; AT2G21270.
GeneIDi816666.
KEGGiath:AT2G21270.

Organism-specific databases

TAIRiAT2G21270.

Phylogenomic databases

KOiK14016.
PhylomeDBiQ9SJV0.

Gene expression databases

ExpressionAtlasiQ9SJV0. baseline and differential.
GenevestigatoriQ9SJV0.

Family and domain databases

InterProiIPR004854. UFD1.
[Graphical view]
PANTHERiPTHR12555. PTHR12555. 1 hit.
PfamiPF03152. UFD1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
  3. Town C.D., Kaul S.
    Submitted (JAN-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.
    , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  5. "Arabidopsis ORF clones."
    de los Reyes C., Quan R., Chen H., Bautista V., Kim C.J., Ecker J.R.
    Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  6. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  7. The Arabidopsis Information Resource (TAIR)
    Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiQ9SJV0_ARATH
AccessioniPrimary (citable) accession number: Q9SJV0
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: June 1, 2002
Last modified: April 1, 2015
This is version 87 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.