Q9SJV0 (Q9SJV0_ARATH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
At2g21270 EMBL ACF28395.1

Submitted name:
Putative ubiquitin fusion-degradation protein EMBL AAD23675.2
Submitted name:
Ubiquitin fusion degradation 1 EMBL AEC07152.1

Gene names

Name:	UFD1 EMBL AEC07152.1
Ordered Locus Names:	At2g21270 TAIR At2g21270 EMBL BAE98665.1
ORF Names:	AT2G21270 EMBL AEC07152.1

Organism

Arabidopsis thaliana (Mouse-ear cress) [Reference proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	319 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	ubiquitin-dependent protein catabolic process Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9SJV0 [UniParc]. Last modified June 1, 2002. Version 2. Checksum: 5BE3F96661EE0967	FASTA	319	35,323
	10 20 30 40 50 60 MFFDGYHYHG TTFEQSYRCY PASFIDKPQL ESGDKIIMPP SALDRLASLH IDYPMLFELR 70 80 90 100 110 120 NAGIERVTHC GVLEFIAEEG MIYMPYWMMQ NLLLQEGDIV RVRNVTLPKG TYVKLQPHTT 130 140 150 160 170 180 DFLDISNPKA ILETALRNYS CLTSGDSIMV PYNNKKYFID IVETKPANAI SIIETDCEVD 190 200 210 220 230 240 FAPPLDYKEP ERPTAPSAAK GPAKAEEVVD EPEPKFNPFT GSGRRLDGRP LAYEPAPASS 250 260 270 280 290 300 SKGKQPVVAN GNGQSSVASS SEKATRAQGK LVFGANGNRA PKEAAPKVGA AKETKKEEQE 310 KKDEPKFQAF SGKKYSLRG

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana." Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. , Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C. Nature 402:761-768(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	Lin X., Kaul S., Shea T.P., Fujii C.Y., Shen M., VanAken S.E., Barnstead M.E., Mason T.M., Bowman C.L., Ronning C.M., Benito M.-I., Carrera A.J., Creasy T.H., Buell C.R., Town C.D., Nierman W.C., Fraser C.M., Venter J.C. Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	Town C.D., Kaul S. Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[4]	"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs." Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K. , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K. Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[5]	"Arabidopsis ORF clones." de los Reyes C., Quan R., Chen H., Bautista V., Kim C.J., Ecker J.R. Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[6]	TAIR Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[7]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC006841 Genomic DNA. Translation: AAD23675.2. BT033134 mRNA. Translation: ACF28395.1. CP002685 Genomic DNA. Translation: AEC07152.1. CP002685 Genomic DNA. Translation: AEC07153.1. AK226526 mRNA. Translation: BAE98665.1.
IPI	IPI00518457.
PIR	C84599.
RefSeq	NP_001031384.1. NM_001036307.1. NP_565504.1. NM_127699.4.
UniGene	At.39582.
3D structure databases
SMR	Q9SJV0. Positions 13-181.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT2G21270.1; AT2G21270.1; AT2G21270. AT2G21270.2; AT2G21270.2; AT2G21270.
GeneID	816666.
KEGG	ath:AT2G21270.
Organism-specific databases
TAIR	At2g21270.
Phylogenomic databases
InParanoid	Q9SJV0.
KO	K14016.
ProtClustDB	CLSN2688302.
Gene expression databases
Genevestigator	Q9SJV0.
Family and domain databases
InterPro	IPR004854. UFD1. [Graphical view]
PANTHER	PTHR12555. PTHR12555. 1 hit.
Pfam	PF03152. UFD1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9SJV0_ARATH

Accession

Primary (citable) accession number: Q9SJV0

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	June 1, 2002
Last modified:	May 1, 2013
This is version 70 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)