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Q9SJV0

- Q9SJV0_ARATH

UniProt

Q9SJV0 - Q9SJV0_ARATH

Protein
Submitted name:

At2g21270

Gene

UFD1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 82 (01 Oct 2014)
      Sequence version 2 (01 Jun 2002)
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    Functioni

    GO - Biological processi

    1. ubiquitin-dependent protein catabolic process Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    At2g21270Imported
    Submitted name:
    Putative ubiquitin fusion-degradation proteinImported
    Submitted name:
    Ubiquitin fusion degradation 1Imported
    Gene namesi
    Name:UFD1Imported
    Ordered Locus Names:At2g21270Imported
    OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 2

    Organism-specific databases

    TAIRiAT2G21270.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9SJV0.

    Structurei

    3D structure databases

    SMRiQ9SJV0. Positions 13-181.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    InParanoidiQ9SJV0.
    KOiK14016.
    PhylomeDBiQ9SJV0.

    Family and domain databases

    InterProiIPR004854. UFD1.
    [Graphical view]
    PANTHERiPTHR12555. PTHR12555. 1 hit.
    PfamiPF03152. UFD1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9SJV0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MFFDGYHYHG TTFEQSYRCY PASFIDKPQL ESGDKIIMPP SALDRLASLH    50
    IDYPMLFELR NAGIERVTHC GVLEFIAEEG MIYMPYWMMQ NLLLQEGDIV 100
    RVRNVTLPKG TYVKLQPHTT DFLDISNPKA ILETALRNYS CLTSGDSIMV 150
    PYNNKKYFID IVETKPANAI SIIETDCEVD FAPPLDYKEP ERPTAPSAAK 200
    GPAKAEEVVD EPEPKFNPFT GSGRRLDGRP LAYEPAPASS SKGKQPVVAN 250
    GNGQSSVASS SEKATRAQGK LVFGANGNRA PKEAAPKVGA AKETKKEEQE 300
    KKDEPKFQAF SGKKYSLRG 319
    Length:319
    Mass (Da):35,323
    Last modified:June 1, 2002 - v2
    Checksum:i5BE3F96661EE0967
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC006841 Genomic DNA. Translation: AAD23675.2.
    BT033134 mRNA. Translation: ACF28395.1.
    CP002685 Genomic DNA. Translation: AEC07152.1.
    CP002685 Genomic DNA. Translation: AEC07153.1.
    AK226526 mRNA. Translation: BAE98665.1.
    PIRiC84599.
    RefSeqiNP_001031384.1. NM_001036307.1.
    NP_565504.1. NM_127699.4.
    UniGeneiAt.39582.

    Genome annotation databases

    EnsemblPlantsiAT2G21270.1; AT2G21270.1; AT2G21270.
    AT2G21270.2; AT2G21270.2; AT2G21270.
    GeneIDi816666.
    KEGGiath:AT2G21270.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC006841 Genomic DNA. Translation: AAD23675.2 .
    BT033134 mRNA. Translation: ACF28395.1 .
    CP002685 Genomic DNA. Translation: AEC07152.1 .
    CP002685 Genomic DNA. Translation: AEC07153.1 .
    AK226526 mRNA. Translation: BAE98665.1 .
    PIRi C84599.
    RefSeqi NP_001031384.1. NM_001036307.1.
    NP_565504.1. NM_127699.4.
    UniGenei At.39582.

    3D structure databases

    SMRi Q9SJV0. Positions 13-181.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT2G21270.1 ; AT2G21270.1 ; AT2G21270 .
    AT2G21270.2 ; AT2G21270.2 ; AT2G21270 .
    GeneIDi 816666.
    KEGGi ath:AT2G21270.

    Organism-specific databases

    TAIRi AT2G21270.

    Phylogenomic databases

    InParanoidi Q9SJV0.
    KOi K14016.
    PhylomeDBi Q9SJV0.

    Gene expression databases

    Genevestigatori Q9SJV0.

    Family and domain databases

    InterProi IPR004854. UFD1.
    [Graphical view ]
    PANTHERi PTHR12555. PTHR12555. 1 hit.
    Pfami PF03152. UFD1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. ColumbiaImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
    3. Town C.D., Kaul S.
      Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    4. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
      Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.
      , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
      Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    5. "Arabidopsis ORF clones."
      de los Reyes C., Quan R., Chen H., Bautista V., Kim C.J., Ecker J.R.
      Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    6. TAIR
      Swarbreck D., Lamesch P., Wilks C., Huala E.
      Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    7. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. ColumbiaImported.

    Entry informationi

    Entry nameiQ9SJV0_ARATH
    AccessioniPrimary (citable) accession number: Q9SJV0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 1, 2000
    Last sequence update: June 1, 2002
    Last modified: October 1, 2014
    This is version 82 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3