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Q9SJV0 (Q9SJV0_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Putative ubiquitin fusion-degradation protein EMBL AAD23675.2

Ubiquitin fusion degradation 1 EMBL AEC07152.1
Gene names
Name:UFD1 EMBL AEC07152.1
Ordered Locus Names:AT2G21270 EMBL AEC07152.1, At2g21270 TAIR AT2G21270
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length319 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Sequences

Sequence LengthMass (Da)Tools
Q9SJV0 [UniParc].

Last modified June 1, 2002. Version 2.
Checksum: 5BE3F96661EE0967

FASTA31935,323
        10         20         30         40         50         60 
MFFDGYHYHG TTFEQSYRCY PASFIDKPQL ESGDKIIMPP SALDRLASLH IDYPMLFELR 

        70         80         90        100        110        120 
NAGIERVTHC GVLEFIAEEG MIYMPYWMMQ NLLLQEGDIV RVRNVTLPKG TYVKLQPHTT 

       130        140        150        160        170        180 
DFLDISNPKA ILETALRNYS CLTSGDSIMV PYNNKKYFID IVETKPANAI SIIETDCEVD 

       190        200        210        220        230        240 
FAPPLDYKEP ERPTAPSAAK GPAKAEEVVD EPEPKFNPFT GSGRRLDGRP LAYEPAPASS 

       250        260        270        280        290        300 
SKGKQPVVAN GNGQSSVASS SEKATRAQGK LVFGANGNRA PKEAAPKVGA AKETKKEEQE 

       310 
KKDEPKFQAF SGKKYSLRG 

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana."
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. expand/collapse author list , Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.
Nature 402:761-768(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]Lin X., Kaul S., Shea T.P., Fujii C.Y., Shen M., VanAken S.E., Barnstead M.E., Mason T.M., Bowman C.L., Ronning C.M., Benito M.-I., Carrera A.J., Creasy T.H., Buell C.R., Town C.D., Nierman W.C., Fraser C.M., Venter J.C.
Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]Town C.D., Kaul S.
Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K. expand/collapse author list , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Arabidopsis ORF clones."
de los Reyes C., Quan R., Chen H., Bautista V., Kim C.J., Ecker J.R.
Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[6]TAIR
Swarbreck D., Lamesch P., Wilks C., Huala E.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[7]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC006841 Genomic DNA. Translation: AAD23675.2.
BT033134 mRNA. Translation: ACF28395.1.
CP002685 Genomic DNA. Translation: AEC07152.1.
CP002685 Genomic DNA. Translation: AEC07153.1.
AK226526 mRNA. Translation: BAE98665.1.
PIRC84599.
RefSeqNP_001031384.1. NM_001036307.1.
NP_565504.1. NM_127699.4.
UniGeneAt.39582.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT2G21270.1; AT2G21270.1; AT2G21270.
AT2G21270.2; AT2G21270.2; AT2G21270.
GeneID816666.
KEGGath:AT2G21270.

Organism-specific databases

TAIRAT2G21270.
At2g21270.

Phylogenomic databases

InParanoidQ9SJV0.
KOK14016.
ProtClustDBCLSN2688302.

Gene expression databases

GenevestigatorQ9SJV0.

Family and domain databases

InterProIPR004854. UFD1.
[Graphical view]
PANTHERPTHR12555. PTHR12555. 1 hit.
PfamPF03152. UFD1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ9SJV0_ARATH
AccessionPrimary (citable) accession number: Q9SJV0
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: June 1, 2002
Last modified: April 16, 2014
This is version 78 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)