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Protein

Pentatricopeptide repeat-containing protein At2g36980, mitochondrial

Gene

PCMP-E73

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g36980, mitochondrial
Gene namesi
Name:PCMP-E73
Ordered Locus Names:At2g36980
ORF Names:T1J8.16
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G36980
TAIRilocus:2057986 AT2G36980

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 7MitochondrionSequence analysis7
ChainiPRO_00003560488 – 625Pentatricopeptide repeat-containing protein At2g36980, mitochondrialAdd BLAST618

Proteomic databases

PaxDbiQ9SJK9

Expressioni

Gene expression databases

ExpressionAtlasiQ9SJK9 baseline and differential
GenevisibleiQ9SJK9 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G36980.1

Structurei

3D structure databases

ProteinModelPortaliQ9SJK9
SMRiQ9SJK9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati3 – 33PPR 1Add BLAST31
Repeati34 – 68PPR 2Add BLAST35
Repeati69 – 103PPR 3Add BLAST35
Repeati104 – 134PPR 4Add BLAST31
Repeati137 – 167PPR 5Add BLAST31
Repeati168 – 202PPR 6Add BLAST35
Repeati203 – 238PPR 7Add BLAST36
Repeati239 – 269PPR 8Add BLAST31
Repeati270 – 300PPR 9Add BLAST31
Repeati301 – 335PPR 10Add BLAST35
Repeati336 – 370PPR 11Add BLAST35
Repeati371 – 401PPR 12Add BLAST31
Repeati402 – 436PPR 13Add BLAST35
Repeati437 – 471PPR 14Add BLAST35
Repeati473 – 503PPR 15Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni512 – 587Type E motifAdd BLAST76
Regioni588 – 618Type E(+) motifAdd BLAST31

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000243248
InParanoidiQ9SJK9
OMAiGNAKQCL
OrthoDBiEOG0936053Q
PhylomeDBiQ9SJK9

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 4 hits
PF13041 PPR_2, 4 hits
TIGRFAMsiTIGR00756 PPR, 7 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 14 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SJK9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVLVRLTSK IASLAKSGRI ASARQVFDGM PELDTVAWNT MLTSYSRLGL
60 70 80 90 100
HQEAIALFTQ LRFSDAKPDD YSFTAILSTC ASLGNVKFGR KIQSLVIRSG
110 120 130 140 150
FCASLPVNNS LIDMYGKCSD TLSANKVFRD MCCDSRNEVT WCSLLFAYMN
160 170 180 190 200
AEQFEAALDV FVEMPKRVAF AWNIMISGHA HCGKLESCLS LFKEMLESEF
210 220 230 240 250
KPDCYTFSSL MNACSADSSN VVYGRMVHAV MLKNGWSSAV EAKNSVLSFY
260 270 280 290 300
TKLGSRDDAM RELESIEVLT QVSWNSIIDA CMKIGETEKA LEVFHLAPEK
310 320 330 340 350
NIVTWTTMIT GYGRNGDGEQ ALRFFVEMMK SGVDSDHFAY GAVLHACSGL
360 370 380 390 400
ALLGHGKMIH GCLIHCGFQG YAYVGNALVN LYAKCGDIKE ADRAFGDIAN
410 420 430 440 450
KDLVSWNTML FAFGVHGLAD QALKLYDNMI ASGIKPDNVT FIGLLTTCSH
460 470 480 490 500
SGLVEEGCMI FESMVKDYRI PLEVDHVTCM IDMFGRGGHL AEAKDLATTY
510 520 530 540 550
SSLVTDSSNN SSWETLLGAC STHWHTELGR EVSKVLKIAE PSEEMSFVLL
560 570 580 590 600
SNLYCSTGRW KEGEDVRREM VERGMKKTPG CSWIEVGNQV STFVVGDSSH
610 620
PRLEELSETL NCLQHEMRNP ETFGP
Length:625
Mass (Da):69,097
Last modified:May 1, 2000 - v1
Checksum:i3339FD9DDD201C1E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006922 Genomic DNA Translation: AAD31583.1
CP002685 Genomic DNA Translation: AEC09330.1
AY461626 mRNA No translation available.
AY461627 mRNA No translation available.
PIRiA84787
RefSeqiNP_181235.1, NM_129254.3
UniGeneiAt.37481

Genome annotation databases

EnsemblPlantsiAT2G36980.1; AT2G36980.1; AT2G36980
GeneIDi818272
GrameneiAT2G36980.1; AT2G36980.1; AT2G36980
KEGGiath:AT2G36980

Similar proteinsi

Entry informationi

Entry nameiPP189_ARATH
AccessioniPrimary (citable) accession number: Q9SJK9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 100 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health