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Protein

Pentatricopeptide repeat-containing protein At2g36980, mitochondrial

Gene

PCMP-E73

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g36980, mitochondrial
Gene namesi
Name:PCMP-E73
Ordered Locus Names:At2g36980
ORF Names:T1J8.16
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G36980.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 77MitochondrionSequence analysis
Chaini8 – 625618Pentatricopeptide repeat-containing protein At2g36980, mitochondrialPRO_0000356048Add
BLAST

Proteomic databases

PaxDbiQ9SJK9.
PRIDEiQ9SJK9.

Expressioni

Gene expression databases

GenevisibleiQ9SJK9. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G36980.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SJK9.
SMRiQ9SJK9. Positions 8-576.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati3 – 3331PPR 1Add
BLAST
Repeati34 – 6835PPR 2Add
BLAST
Repeati69 – 10335PPR 3Add
BLAST
Repeati104 – 13431PPR 4Add
BLAST
Repeati137 – 16731PPR 5Add
BLAST
Repeati168 – 20235PPR 6Add
BLAST
Repeati203 – 23836PPR 7Add
BLAST
Repeati239 – 26931PPR 8Add
BLAST
Repeati270 – 30031PPR 9Add
BLAST
Repeati301 – 33535PPR 10Add
BLAST
Repeati336 – 37035PPR 11Add
BLAST
Repeati371 – 40131PPR 12Add
BLAST
Repeati402 – 43635PPR 13Add
BLAST
Repeati437 – 47135PPR 14Add
BLAST
Repeati473 – 50331PPR 15Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni512 – 58776Type E motifAdd
BLAST
Regioni588 – 61831Type E(+) motifAdd
BLAST

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 15 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000243248.
InParanoidiQ9SJK9.
OMAiSIIDACM.
OrthoDBiEOG0936053Q.
PhylomeDBiQ9SJK9.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 4 hits.
PF13041. PPR_2. 4 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 7 hits.
PROSITEiPS51375. PPR. 14 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SJK9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVLVRLTSK IASLAKSGRI ASARQVFDGM PELDTVAWNT MLTSYSRLGL
60 70 80 90 100
HQEAIALFTQ LRFSDAKPDD YSFTAILSTC ASLGNVKFGR KIQSLVIRSG
110 120 130 140 150
FCASLPVNNS LIDMYGKCSD TLSANKVFRD MCCDSRNEVT WCSLLFAYMN
160 170 180 190 200
AEQFEAALDV FVEMPKRVAF AWNIMISGHA HCGKLESCLS LFKEMLESEF
210 220 230 240 250
KPDCYTFSSL MNACSADSSN VVYGRMVHAV MLKNGWSSAV EAKNSVLSFY
260 270 280 290 300
TKLGSRDDAM RELESIEVLT QVSWNSIIDA CMKIGETEKA LEVFHLAPEK
310 320 330 340 350
NIVTWTTMIT GYGRNGDGEQ ALRFFVEMMK SGVDSDHFAY GAVLHACSGL
360 370 380 390 400
ALLGHGKMIH GCLIHCGFQG YAYVGNALVN LYAKCGDIKE ADRAFGDIAN
410 420 430 440 450
KDLVSWNTML FAFGVHGLAD QALKLYDNMI ASGIKPDNVT FIGLLTTCSH
460 470 480 490 500
SGLVEEGCMI FESMVKDYRI PLEVDHVTCM IDMFGRGGHL AEAKDLATTY
510 520 530 540 550
SSLVTDSSNN SSWETLLGAC STHWHTELGR EVSKVLKIAE PSEEMSFVLL
560 570 580 590 600
SNLYCSTGRW KEGEDVRREM VERGMKKTPG CSWIEVGNQV STFVVGDSSH
610 620
PRLEELSETL NCLQHEMRNP ETFGP
Length:625
Mass (Da):69,097
Last modified:May 1, 2000 - v1
Checksum:i3339FD9DDD201C1E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006922 Genomic DNA. Translation: AAD31583.1.
CP002685 Genomic DNA. Translation: AEC09330.1.
AY461626 mRNA. No translation available.
AY461627 mRNA. No translation available.
PIRiA84787.
RefSeqiNP_181235.1. NM_129254.2.
UniGeneiAt.37481.

Genome annotation databases

EnsemblPlantsiAT2G36980.1; AT2G36980.1; AT2G36980.
GeneIDi818272.
GrameneiAT2G36980.1; AT2G36980.1; AT2G36980.
KEGGiath:AT2G36980.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006922 Genomic DNA. Translation: AAD31583.1.
CP002685 Genomic DNA. Translation: AEC09330.1.
AY461626 mRNA. No translation available.
AY461627 mRNA. No translation available.
PIRiA84787.
RefSeqiNP_181235.1. NM_129254.2.
UniGeneiAt.37481.

3D structure databases

ProteinModelPortaliQ9SJK9.
SMRiQ9SJK9. Positions 8-576.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G36980.1.

Proteomic databases

PaxDbiQ9SJK9.
PRIDEiQ9SJK9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G36980.1; AT2G36980.1; AT2G36980.
GeneIDi818272.
GrameneiAT2G36980.1; AT2G36980.1; AT2G36980.
KEGGiath:AT2G36980.

Organism-specific databases

TAIRiAT2G36980.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000243248.
InParanoidiQ9SJK9.
OMAiSIIDACM.
OrthoDBiEOG0936053Q.
PhylomeDBiQ9SJK9.

Miscellaneous databases

PROiQ9SJK9.

Gene expression databases

GenevisibleiQ9SJK9. AT.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 4 hits.
PF13041. PPR_2. 4 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 7 hits.
PROSITEiPS51375. PPR. 14 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP189_ARATH
AccessioniPrimary (citable) accession number: Q9SJK9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 2000
Last modified: September 7, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.