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Reviewed, UniProtKB/Swiss-Prot Q9SJA7 (SOX_ARATH)

Last modified November 3, 2009. Version 66. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Probable sarcosine oxidase
    EC=1.5.3.1
Gene names
Ordered Locus Names: At2g24580
ORF Names: F25P17.12
OrganismArabidopsis thaliana (Mouse-ear cress) [Complete proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

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Protein attributes

Sequence length416 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at transcript level.

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General annotation (Comments)

Catalytic activity

Sarcosine + H2O + O2 = glycine + formaldehyde + H2O2.

Cofactor

Binds 1 FAD per subunit By similarity.

Sequence similarities

Belongs to the MSOX/MTOX family.

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Ontologies

Keywords
   LigandFAD
Flavoprotein
   Molecular functionOxidoreductase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processoxidation reduction

Inferred from electronic annotation. Source: UniProtKB-KW

tetrahydrofolate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionsarcosine oxidase activity

Inferred from direct assay. Source: TAIR

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 416416Probable sarcosine oxidase
PRO_0000213777

Regions

Nucleotide binding10 – 4031FAD Potential

Amino acid modifications

Modified residue3251S-8alpha-FAD cysteine Probable

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Sequences

Sequence LengthMass (Da)Tools
Q9SJA7-1 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: E12E3792DF305BCC

FASTA41645,702
        10         20         30         40         50         60 
MEYSDDGRFD VIVVGAGVMG SSAAYQLAKR GQKTLLLEQF DFLHHRGSSH GESRTIRATY 

        70         80         90        100        110        120 
PEDYYYSMVS ESTRLWAAAQ SEIGYKVHFP TQQFDMGPAD QQSLLSVVAT CQKHGLAHRV 

       130        140        150        160        170        180 
MDSHAVSEHF SGRISIPENW IGVSTELGGI IKPTKAVSMF QTLAIGHGAI LRDNTKVANI 

       190        200        210        220        230        240 
KRDGESGEGV IVCTVKGDKF YGKKCIVTAG AWISKLVKTV AGIDFPVEPL ETTVCYWRIK 

       250        260        270        280        290        300 
EGHEEKFTID GEFPTFASYG APYVYGTPSL EYPGLIKVAV HGGYWCDPDK RPWGPGVKLE 

       310        320        330        340        350        360 
ELKEWIKERF GGMVDSEGPV ATQLCMYSMT PDEDFVIDFL GGEFGRDVVV GGGFSGHGFK 

       370        380        390        400        410 
MAPAVGRILA DMAMEVEAGG GGVEMKQFSL RRFEDNPKGN AKEYPDQVIL DVPLKH

« Hide

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References

[1]"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana."
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. expand/collapse author list , Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.
Nature 402:761-768(1999) [PubMed: 10617197] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed: 14593172] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
+Additional computationally mapped references.

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Cross-references

Sequence databases

AC006954 Genomic DNA. Translation: AAD23888.1.
AY065254 mRNA. Translation: AAL38730.1.
AY117247 mRNA. Translation: AAM51322.1.
IPIIPI00534702.
PIRD84638.
RefSeqNP_180034.1.
UniGeneAt.28544

3D structure databases

HSSPHSSP built from PDB template 1EL5 based on UniProtKB P40859.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ9SJA7.

Proteomic databases

PRIDEQ9SJA7.

Genome annotation databases

GeneID816994.
GenomeReviewsGene locus AT2G24580 in contig CT485783_GR.
KEGGath:AT2G24580.
NMPDRfig|3702.1.peg.9482.

Organism-specific databases

TAIRAt2g24580.

Phylogenomic databases

OMAKTPSFDL.

Enzyme and pathway databases

BRENDA1.5.3.1. 302.

Gene expression databases

ArrayExpressQ9SJA7.
GenevestigatorQ9SJA7.
GermOnlineAT2G24580. Arabidopsis thaliana.

Family and domain databases

InterProIPR006076. FAD-dep_OxRdtase.
IPR006281. SoxA_mon.
[Graphical view]
PfamPF01266. DAO. 1 hit.
[Graphical view]
TIGRFAMsTIGR01377. soxA_mon. 1 hit.
ProtoNetSearch...

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Entry information

Entry nameSOX_ARATH
AccessionPrimary (citable) accession number: Q9SJA7
Entry history
Integrated into UniProtKB/Swiss-Prot: January 23, 2002
Last sequence update: May 1, 2000
Last modified: November 3, 2009
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectPPAP (Plant Proteome Annotation Project)

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Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents