Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Vesicle-associated membrane protein 712

Gene

VAMP712

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Involved in the targeting and/or fusion of transport vesicles to their target membrane.1 Publication

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Vesicle-associated membrane protein 7121 Publication
Short name:
AtVAMP7121 Publication
Gene namesi
Name:VAMP7121 Publication
Ordered Locus Names:At2g25340Imported
ORF Names:T22F11.7Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G25340.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini2 – 189188CytoplasmicSequence analysisAdd
BLAST
Transmembranei190 – 21021Helical; Anchor for type IV membrane proteinSequence analysisAdd
BLAST
Topological domaini211 – 2199VesicularSequence analysis

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • late endosome membrane Source: UniProtKB-SubCell
  • vacuolar membrane Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Membrane, Vacuole

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 219218Vesicle-associated membrane protein 712PRO_0000206751Add
BLAST

Proteomic databases

PaxDbiQ9SIQ9.
PRIDEiQ9SIQ9.

Expressioni

Tissue specificityi

Expressed in flowers, leaves, stems and roots.1 Publication

Gene expression databases

GenevisibleiQ9SIQ9. AT.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi3702.AT2G25340.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SIQ9.
SMRiQ9SIQ9. Positions 1-185.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini7 – 111105LonginPROSITE-ProRule annotationAdd
BLAST
Domaini126 – 18661v-SNARE coiled-coil homologyPROSITE-ProRule annotationAdd
BLAST

Domaini

The longin domain is critical for the vacuolar localization.1 Publication

Sequence similaritiesi

Belongs to the synaptobrevin family.Curated
Contains 1 longin domain.PROSITE-ProRule annotation
Contains 1 v-SNARE coiled-coil homology domain.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0859. Eukaryota.
COG5143. LUCA.
HOGENOMiHOG000042711.
InParanoidiQ9SIQ9.
KOiK08515.
OMAiCMADEDA.
PhylomeDBiQ9SIQ9.

Family and domain databases

Gene3Di1.10.3840.10. 1 hit.
3.30.450.50. 1 hit.
InterProiIPR011012. Longin-like_dom.
IPR010908. Longin_dom.
IPR001388. Synaptobrevin.
[Graphical view]
PfamiPF13774. Longin. 1 hit.
PF00957. Synaptobrevin. 1 hit.
[Graphical view]
PRINTSiPR00219. SYNAPTOBREVN.
SMARTiSM01270. Longin. 1 hit.
[Graphical view]
SUPFAMiSSF64356. SSF64356. 1 hit.
PROSITEiPS50859. LONGIN. 1 hit.
PS00417. SYNAPTOBREVIN. 1 hit.
PS50892. V_SNARE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SIQ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSILYALVAR GTVVLAELST TSTNASTIAK QILEKIPGNG DSHVSYSQDR
60 70 80 90 100
YVFHVKRTDG LTVLCMADED AGRRIPFSFL EDIHQRFVRT YGRAIHSAQA
110 120 130 140 150
YAMNDEFSRV LNQQIEYYSN DPNADTISRI KGEMNQVRDV MIENIDNILD
160 170 180 190 200
RGERLELLVD KTANMQGNTF RFRKQTRRFN NTVWWRNCKL TLLLILVLLV
210
IIYIGVAFAC HGPTLPSCV
Length:219
Mass (Da):24,966
Last modified:May 1, 2000 - v1
Checksum:i7A63C85A140913B9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC007070 Genomic DNA. Translation: AAD23657.1.
CP002685 Genomic DNA. Translation: AEC07690.1.
PIRiC84647.
RefSeqiNP_180106.1. NM_128091.1.
UniGeneiAt.52906.

Genome annotation databases

EnsemblPlantsiAT2G25340.1; AT2G25340.1; AT2G25340.
GeneIDi817072.
GrameneiAT2G25340.1; AT2G25340.1; AT2G25340.
KEGGiath:AT2G25340.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC007070 Genomic DNA. Translation: AAD23657.1.
CP002685 Genomic DNA. Translation: AEC07690.1.
PIRiC84647.
RefSeqiNP_180106.1. NM_128091.1.
UniGeneiAt.52906.

3D structure databases

ProteinModelPortaliQ9SIQ9.
SMRiQ9SIQ9. Positions 1-185.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G25340.1.

Proteomic databases

PaxDbiQ9SIQ9.
PRIDEiQ9SIQ9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G25340.1; AT2G25340.1; AT2G25340.
GeneIDi817072.
GrameneiAT2G25340.1; AT2G25340.1; AT2G25340.
KEGGiath:AT2G25340.

Organism-specific databases

TAIRiAT2G25340.

Phylogenomic databases

eggNOGiKOG0859. Eukaryota.
COG5143. LUCA.
HOGENOMiHOG000042711.
InParanoidiQ9SIQ9.
KOiK08515.
OMAiCMADEDA.
PhylomeDBiQ9SIQ9.

Miscellaneous databases

PROiQ9SIQ9.

Gene expression databases

GenevisibleiQ9SIQ9. AT.

Family and domain databases

Gene3Di1.10.3840.10. 1 hit.
3.30.450.50. 1 hit.
InterProiIPR011012. Longin-like_dom.
IPR010908. Longin_dom.
IPR001388. Synaptobrevin.
[Graphical view]
PfamiPF13774. Longin. 1 hit.
PF00957. Synaptobrevin. 1 hit.
[Graphical view]
PRINTSiPR00219. SYNAPTOBREVN.
SMARTiSM01270. Longin. 1 hit.
[Graphical view]
SUPFAMiSSF64356. SSF64356. 1 hit.
PROSITEiPS50859. LONGIN. 1 hit.
PS00417. SYNAPTOBREVIN. 1 hit.
PS50892. V_SNARE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors."
    Sanderfoot A.A., Assaad F.F., Raikhel N.V.
    Plant Physiol. 124:1558-1569(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.
  4. "Systematic analysis of SNARE molecules in Arabidopsis: dissection of the post-Golgi network in plant cells."
    Uemura T., Ueda T., Ohniwa R.L., Nakano A., Takeyasu K., Sato M.H.
    Cell Struct. Funct. 29:49-65(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY, SUBCELLULAR LOCATION.
  5. "The longin domain regulates subcellular targeting of VAMP7 in Arabidopsis thaliana."
    Uemura T., Sato M.H., Takeyasu K.
    FEBS Lett. 579:2842-2846(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: DOMAIN.

Entry informationi

Entry nameiVA712_ARATH
AccessioniPrimary (citable) accession number: Q9SIQ9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 17, 2003
Last sequence update: May 1, 2000
Last modified: May 11, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.