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Q9SIJ5

- RADL2_ARATH

UniProt

Q9SIJ5 - RADL2_ARATH

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Protein
Protein RADIALIS-like 2
Gene
RL2, MEE3, RMS1, At2g21650, F2G1.8
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

Probable transcription factor. Required for female gametophyte development.1 Publication

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. chromatin binding Source: InterPro
  3. sequence-specific DNA binding transcription factor activity Source: TAIR
Complete GO annotation...

GO - Biological processi

  1. embryo development ending in seed dormancy Source: TAIR
  2. gravitropism Source: TAIR
  3. response to red light Source: TAIR
  4. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Protein RADIALIS-like 2
Short name:
AtRL2
Short name:
Protein RAD-like 2
Alternative name(s):
Protein MATERNAL EFFECT EMBRYO ARREST 3
Protein RADIALIS-LIKE SANT/MYB 1
Short name:
Protein RSM1
Gene namesi
Name:RL2
Synonyms:MEE3, RMS1
Ordered Locus Names:At2g21650
ORF Names:F2G1.8
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 2

Organism-specific databases

TAIRiAT2G21650.

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Disruption phenotypei

Endosperm development arrested.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 101101Protein RADIALIS-like 2
PRO_0000419442Add
BLAST

Proteomic databases

PaxDbiQ9SIJ5.
PRIDEiQ9SIJ5.

Expressioni

Tissue specificityi

Expressed in the funiculus of ovules and in embryos. In young ovules, expression is observed in the adaxial side of the funiculus (the stalk connecting the embryo sac to the placenta). Also expressed in heart-stage embryos, in the cortex and endodermis of the hypocotyl region but not in the cotyledons, shoot and root apical meristems, provasculature or epidermis. Not detected in young seedlings, mature roots or in young floral primordia.1 Publication

Gene expression databases

GenevestigatoriQ9SIJ5.

Interactioni

Protein-protein interaction databases

IntActiQ9SIJ5. 1 interaction.
STRINGi3702.AT2G21650.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ9SIJ5.
SMRiQ9SIJ5. Positions 14-73.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini9 – 6456SANT
Add
BLAST

Sequence similaritiesi

Contains 1 SANT domain.

Phylogenomic databases

eggNOGiNOG308303.
HOGENOMiHOG000238103.
InParanoidiQ9SIJ5.
OMAiYDLLVRD.
PhylomeDBiQ9SIJ5.

Family and domain databases

InterProiIPR009057. Homeodomain-like.
IPR017877. Myb-like_dom.
IPR001005. SANT/Myb.
[Graphical view]
SMARTiSM00717. SANT. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9SIJ5-1 [UniParc]FASTAAdd to Basket

« Hide

MASGSMSSYG SGSWTVKQNK AFERALAVYD QDTPDRWHNV ARAVGGKTPE    50
EAKRQYDLLV RDIESIENGH VPFPDYKTTT GNSNRGRLRD EEKRMRSMKL 100
Q 101
Length:101
Mass (Da):11,508
Last modified:May 1, 2000 - v1
Checksum:i83FCE4637D687C32
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY519526 mRNA. Translation: AAS09996.1.
AC007119 Genomic DNA. Translation: AAD23640.1.
CP002685 Genomic DNA. Translation: AEC07207.1.
BT008554 mRNA. Translation: AAP40381.1.
BT008698 mRNA. Translation: AAP40504.1.
AK229516 mRNA. Translation: BAF01371.1.
PIRiG84603.
RefSeqiNP_179759.1. NM_127736.3.
UniGeneiAt.43298.

Genome annotation databases

EnsemblPlantsiAT2G21650.1; AT2G21650.1; AT2G21650.
GeneIDi816703.
KEGGiath:AT2G21650.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY519526 mRNA. Translation: AAS09996.1 .
AC007119 Genomic DNA. Translation: AAD23640.1 .
CP002685 Genomic DNA. Translation: AEC07207.1 .
BT008554 mRNA. Translation: AAP40381.1 .
BT008698 mRNA. Translation: AAP40504.1 .
AK229516 mRNA. Translation: BAF01371.1 .
PIRi G84603.
RefSeqi NP_179759.1. NM_127736.3.
UniGenei At.43298.

3D structure databases

ProteinModelPortali Q9SIJ5.
SMRi Q9SIJ5. Positions 14-73.
ModBasei Search...

Protein-protein interaction databases

IntActi Q9SIJ5. 1 interaction.
STRINGi 3702.AT2G21650.1-P.

Proteomic databases

PaxDbi Q9SIJ5.
PRIDEi Q9SIJ5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT2G21650.1 ; AT2G21650.1 ; AT2G21650 .
GeneIDi 816703.
KEGGi ath:AT2G21650.

Organism-specific databases

TAIRi AT2G21650.

Phylogenomic databases

eggNOGi NOG308303.
HOGENOMi HOG000238103.
InParanoidi Q9SIJ5.
OMAi YDLLVRD.
PhylomeDBi Q9SIJ5.

Gene expression databases

Genevestigatori Q9SIJ5.

Family and domain databases

InterProi IPR009057. Homeodomain-like.
IPR017877. Myb-like_dom.
IPR001005. SANT/Myb.
[Graphical view ]
SMARTi SM00717. SANT. 1 hit.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The MYB transcription factor family in Arabidopsis: a genome-wide cloning and expression pattern analysis."
    Qu L.-J., Gu H.
    Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  6. "Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis."
    Pagnussat G.C., Yu H.-J., Ngo Q.A., Rajani S., Mayalagu S., Johnson C.S., Capron A., Xie L.-F., Ye D., Sundaresan V.
    Development 132:603-614(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, DISRUPTION PHENOTYPE.
  7. "The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family."
    Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y., Wang X., Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W., Chen Z., Gu H., Qu L.-J.
    Plant Mol. Biol. 60:107-124(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.
  8. "Diversification and co-option of RAD-like genes in the evolution of floral asymmetry."
    Baxter C.E.L., Costa M.M.R., Coen E.S.
    Plant J. 52:105-113(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, TISSUE SPECIFICITY.
  9. "A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to HOOKLESS1-mediated signal transduction during early morphogenesis."
    Hamaguchi A., Yamashino T., Koizumi N., Kiba T., Kojima M., Sakakibara H., Mizuno T.
    Biosci. Biotechnol. Biochem. 72:2687-2696(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiRADL2_ARATH
AccessioniPrimary (citable) accession number: Q9SIJ5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 3, 2012
Last sequence update: May 1, 2000
Last modified: May 14, 2014
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Miscellaneous

Assigned as a member of the MYB-related gene family, I-box-binding-like subfamily (1 Publication).

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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