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Protein

Protein RADIALIS-like 2

Gene

RL2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Probable transcription factor. Required for female gametophyte development.1 Publication

Miscellaneous

Assigned as a member of the MYB-related gene family, I-box-binding-like subfamily.1 Publication

GO - Molecular functioni

  • DNA binding Source: InterPro
  • DNA binding transcription factor activity Source: TAIR

GO - Biological processi

  • embryo development ending in seed dormancy Source: TAIR
  • gravitropism Source: TAIR
  • response to red light Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Protein RADIALIS-like 2
Short name:
AtRL2
Short name:
Protein RAD-like 2
Alternative name(s):
Protein MATERNAL EFFECT EMBRYO ARREST 3
Protein RADIALIS-LIKE SANT/MYB 1
Short name:
Protein RSM1
Gene namesi
Name:RL2
Synonyms:MEE3, RMS1
Ordered Locus Names:At2g21650
ORF Names:F2G1.8
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G21650
TAIRilocus:2049374 AT2G21650

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Disruption phenotypei

Endosperm development arrested.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004194421 – 101Protein RADIALIS-like 2Add BLAST101

Proteomic databases

PaxDbiQ9SIJ5

Expressioni

Tissue specificityi

Expressed in the funiculus of ovules and in embryos. In young ovules, expression is observed in the adaxial side of the funiculus (the stalk connecting the embryo sac to the placenta). Also expressed in heart-stage embryos, in the cortex and endodermis of the hypocotyl region but not in the cotyledons, shoot and root apical meristems, provasculature or epidermis. Not detected in young seedlings, mature roots or in young floral primordia.1 Publication

Gene expression databases

ExpressionAtlasiQ9SIJ5 baseline and differential
GenevisibleiQ9SIJ5 AT

Interactioni

Protein-protein interaction databases

BioGridi2056, 3 interactors
IntActiQ9SIJ5, 5 interactors
STRINGi3702.AT2G21650.1

Structurei

3D structure databases

ProteinModelPortaliQ9SIJ5
SMRiQ9SIJ5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 64SANTAdd BLAST56

Phylogenomic databases

eggNOGiKOG0724 Eukaryota
COG5269 LUCA
HOGENOMiHOG000238103
InParanoidiQ9SIJ5
OMAiYDLLVRD
OrthoDBiEOG09360YUO
PhylomeDBiQ9SIJ5

Family and domain databases

CDDicd00167 SANT, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR001005 SANT/Myb
SMARTiView protein in SMART
SM00717 SANT, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit

Sequencei

Sequence statusi: Complete.

Q9SIJ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASGSMSSYG SGSWTVKQNK AFERALAVYD QDTPDRWHNV ARAVGGKTPE
60 70 80 90 100
EAKRQYDLLV RDIESIENGH VPFPDYKTTT GNSNRGRLRD EEKRMRSMKL

Q
Length:101
Mass (Da):11,508
Last modified:May 1, 2000 - v1
Checksum:i83FCE4637D687C32
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY519526 mRNA Translation: AAS09996.1
AC007119 Genomic DNA Translation: AAD23640.1
CP002685 Genomic DNA Translation: AEC07207.1
BT008554 mRNA Translation: AAP40381.1
BT008698 mRNA Translation: AAP40504.1
AK229516 mRNA Translation: BAF01371.1
PIRiG84603
RefSeqiNP_179759.1, NM_127736.4
UniGeneiAt.43298

Genome annotation databases

EnsemblPlantsiAT2G21650.1; AT2G21650.1; AT2G21650
GeneIDi816703
GrameneiAT2G21650.1; AT2G21650.1; AT2G21650
KEGGiath:AT2G21650

Similar proteinsi

Entry informationi

Entry nameiRADL2_ARATH
AccessioniPrimary (citable) accession number: Q9SIJ5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 3, 2012
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 125 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names

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