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Q9SIJ5 (RADL2_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 100. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein RADIALIS-like 2

Short name=AtRL2
Short name=Protein RAD-like 2
Alternative name(s):
Protein MATERNAL EFFECT EMBRYO ARREST 3
Protein RADIALIS-LIKE SANT/MYB 1
Short name=Protein RSM1
Gene names
Name:RL2
Synonyms:MEE3, RMS1
Ordered Locus Names:At2g21650
ORF Names:F2G1.8
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length101 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Probable transcription factor. Required for female gametophyte development. Ref.6

Subcellular location

Nucleus By similarity.

Tissue specificity

Expressed in the funiculus of ovules and in embryos. In young ovules, expression is observed in the adaxial side of the funiculus (the stalk connecting the embryo sac to the placenta). Also expressed in heart-stage embryos, in the cortex and endodermis of the hypocotyl region but not in the cotyledons, shoot and root apical meristems, provasculature or epidermis. Not detected in young seedlings, mature roots or in young floral primordia. Ref.8

Disruption phenotype

Endosperm development arrested. Ref.6

Miscellaneous

Assigned as a member of the MYB-related gene family, I-box-binding-like subfamily (Ref.7).

Sequence similarities

Contains 1 SANT domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 101101Protein RADIALIS-like 2
PRO_0000419442

Regions

Domain9 – 6456SANT

Sequences

Sequence LengthMass (Da)Tools
Q9SIJ5 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 83FCE4637D687C32

FASTA10111,508
        10         20         30         40         50         60 
MASGSMSSYG SGSWTVKQNK AFERALAVYD QDTPDRWHNV ARAVGGKTPE EAKRQYDLLV 

        70         80         90        100 
RDIESIENGH VPFPDYKTTT GNSNRGRLRD EEKRMRSMKL Q 

« Hide

References

« Hide 'large scale' references
[1]"The MYB transcription factor family in Arabidopsis: a genome-wide cloning and expression pattern analysis."
Qu L.-J., Gu H.
Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
[2]"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana."
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. expand/collapse author list , Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.
Nature 402:761-768(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[4]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[5]"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K. expand/collapse author list , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[6]"Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis."
Pagnussat G.C., Yu H.-J., Ngo Q.A., Rajani S., Mayalagu S., Johnson C.S., Capron A., Xie L.-F., Ye D., Sundaresan V.
Development 132:603-614(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: FUNCTION, DISRUPTION PHENOTYPE.
[7]"The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family."
Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y., Wang X., Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W., Chen Z., Gu H., Qu L.-J.
Plant Mol. Biol. 60:107-124(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY.
[8]"Diversification and co-option of RAD-like genes in the evolution of floral asymmetry."
Baxter C.E.L., Costa M.M.R., Coen E.S.
Plant J. 52:105-113(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY, TISSUE SPECIFICITY.
[9]"A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to HOOKLESS1-mediated signal transduction during early morphogenesis."
Hamaguchi A., Yamashino T., Koizumi N., Kiba T., Kojima M., Sakakibara H., Mizuno T.
Biosci. Biotechnol. Biochem. 72:2687-2696(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY519526 mRNA. Translation: AAS09996.1.
AC007119 Genomic DNA. Translation: AAD23640.1.
CP002685 Genomic DNA. Translation: AEC07207.1.
BT008554 mRNA. Translation: AAP40381.1.
BT008698 mRNA. Translation: AAP40504.1.
AK229516 mRNA. Translation: BAF01371.1.
PIRG84603.
RefSeqNP_179759.1. NM_127736.3.
UniGeneAt.43298.

3D structure databases

ProteinModelPortalQ9SIJ5.
SMRQ9SIJ5. Positions 14-73.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActQ9SIJ5. 1 interaction.
STRING3702.AT2G21650.1-P.

Proteomic databases

PaxDbQ9SIJ5.
PRIDEQ9SIJ5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT2G21650.1; AT2G21650.1; AT2G21650.
GeneID816703.
KEGGath:AT2G21650.

Organism-specific databases

TAIRAT2G21650.

Phylogenomic databases

eggNOGNOG308303.
HOGENOMHOG000238103.
InParanoidQ9SIJ5.
OMAYDLLVRD.
PhylomeDBQ9SIJ5.

Gene expression databases

GenevestigatorQ9SIJ5.

Family and domain databases

InterProIPR009057. Homeodomain-like.
IPR017877. Myb-like_dom.
IPR001005. SANT/Myb.
[Graphical view]
SMARTSM00717. SANT. 1 hit.
[Graphical view]
SUPFAMSSF46689. SSF46689. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRADL2_ARATH
AccessionPrimary (citable) accession number: Q9SIJ5
Entry history
Integrated into UniProtKB/Swiss-Prot: October 3, 2012
Last sequence update: May 1, 2000
Last modified: May 14, 2014
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names