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Q9SIJ5

- RADL2_ARATH

UniProt

Q9SIJ5 - RADL2_ARATH

Protein

Protein RADIALIS-like 2

Gene

RL2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    Probable transcription factor. Required for female gametophyte development.1 Publication

    GO - Molecular functioni

    1. chromatin binding Source: InterPro
    2. DNA binding Source: InterPro
    3. sequence-specific DNA binding transcription factor activity Source: TAIR

    GO - Biological processi

    1. embryo development ending in seed dormancy Source: TAIR
    2. gravitropism Source: TAIR
    3. response to red light Source: TAIR
    4. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein RADIALIS-like 2
    Short name:
    AtRL2
    Short name:
    Protein RAD-like 2
    Alternative name(s):
    Protein MATERNAL EFFECT EMBRYO ARREST 3
    Protein RADIALIS-LIKE SANT/MYB 1
    Short name:
    Protein RSM1
    Gene namesi
    Name:RL2
    Synonyms:MEE3, RMS1
    Ordered Locus Names:At2g21650
    ORF Names:F2G1.8
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 2

    Organism-specific databases

    TAIRiAT2G21650.

    Subcellular locationi

    Nucleus By similarity

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Nucleus

    Pathology & Biotechi

    Disruption phenotypei

    Endosperm development arrested.1 Publication

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 101101Protein RADIALIS-like 2PRO_0000419442Add
    BLAST

    Proteomic databases

    PaxDbiQ9SIJ5.
    PRIDEiQ9SIJ5.

    Expressioni

    Tissue specificityi

    Expressed in the funiculus of ovules and in embryos. In young ovules, expression is observed in the adaxial side of the funiculus (the stalk connecting the embryo sac to the placenta). Also expressed in heart-stage embryos, in the cortex and endodermis of the hypocotyl region but not in the cotyledons, shoot and root apical meristems, provasculature or epidermis. Not detected in young seedlings, mature roots or in young floral primordia.1 Publication

    Gene expression databases

    GenevestigatoriQ9SIJ5.

    Interactioni

    Protein-protein interaction databases

    IntActiQ9SIJ5. 1 interaction.
    STRINGi3702.AT2G21650.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9SIJ5.
    SMRiQ9SIJ5. Positions 14-73.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini9 – 6456SANTAdd
    BLAST

    Sequence similaritiesi

    Contains 1 SANT domain.Curated

    Phylogenomic databases

    eggNOGiNOG308303.
    HOGENOMiHOG000238103.
    InParanoidiQ9SIJ5.
    OMAiYDLLVRD.
    PhylomeDBiQ9SIJ5.

    Family and domain databases

    InterProiIPR009057. Homeodomain-like.
    IPR017877. Myb-like_dom.
    IPR001005. SANT/Myb.
    [Graphical view]
    SMARTiSM00717. SANT. 1 hit.
    [Graphical view]
    SUPFAMiSSF46689. SSF46689. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q9SIJ5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASGSMSSYG SGSWTVKQNK AFERALAVYD QDTPDRWHNV ARAVGGKTPE    50
    EAKRQYDLLV RDIESIENGH VPFPDYKTTT GNSNRGRLRD EEKRMRSMKL 100
    Q 101
    Length:101
    Mass (Da):11,508
    Last modified:May 1, 2000 - v1
    Checksum:i83FCE4637D687C32
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY519526 mRNA. Translation: AAS09996.1.
    AC007119 Genomic DNA. Translation: AAD23640.1.
    CP002685 Genomic DNA. Translation: AEC07207.1.
    BT008554 mRNA. Translation: AAP40381.1.
    BT008698 mRNA. Translation: AAP40504.1.
    AK229516 mRNA. Translation: BAF01371.1.
    PIRiG84603.
    RefSeqiNP_179759.1. NM_127736.3.
    UniGeneiAt.43298.

    Genome annotation databases

    EnsemblPlantsiAT2G21650.1; AT2G21650.1; AT2G21650.
    GeneIDi816703.
    KEGGiath:AT2G21650.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY519526 mRNA. Translation: AAS09996.1 .
    AC007119 Genomic DNA. Translation: AAD23640.1 .
    CP002685 Genomic DNA. Translation: AEC07207.1 .
    BT008554 mRNA. Translation: AAP40381.1 .
    BT008698 mRNA. Translation: AAP40504.1 .
    AK229516 mRNA. Translation: BAF01371.1 .
    PIRi G84603.
    RefSeqi NP_179759.1. NM_127736.3.
    UniGenei At.43298.

    3D structure databases

    ProteinModelPortali Q9SIJ5.
    SMRi Q9SIJ5. Positions 14-73.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi Q9SIJ5. 1 interaction.
    STRINGi 3702.AT2G21650.1-P.

    Proteomic databases

    PaxDbi Q9SIJ5.
    PRIDEi Q9SIJ5.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT2G21650.1 ; AT2G21650.1 ; AT2G21650 .
    GeneIDi 816703.
    KEGGi ath:AT2G21650.

    Organism-specific databases

    TAIRi AT2G21650.

    Phylogenomic databases

    eggNOGi NOG308303.
    HOGENOMi HOG000238103.
    InParanoidi Q9SIJ5.
    OMAi YDLLVRD.
    PhylomeDBi Q9SIJ5.

    Gene expression databases

    Genevestigatori Q9SIJ5.

    Family and domain databases

    InterProi IPR009057. Homeodomain-like.
    IPR017877. Myb-like_dom.
    IPR001005. SANT/Myb.
    [Graphical view ]
    SMARTi SM00717. SANT. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46689. SSF46689. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The MYB transcription factor family in Arabidopsis: a genome-wide cloning and expression pattern analysis."
      Qu L.-J., Gu H.
      Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    3. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    5. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
      Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
      , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
      Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    6. "Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis."
      Pagnussat G.C., Yu H.-J., Ngo Q.A., Rajani S., Mayalagu S., Johnson C.S., Capron A., Xie L.-F., Ye D., Sundaresan V.
      Development 132:603-614(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION, DISRUPTION PHENOTYPE.
    7. "The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family."
      Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y., Wang X., Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W., Chen Z., Gu H., Qu L.-J.
      Plant Mol. Biol. 60:107-124(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY.
    8. "Diversification and co-option of RAD-like genes in the evolution of floral asymmetry."
      Baxter C.E.L., Costa M.M.R., Coen E.S.
      Plant J. 52:105-113(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, TISSUE SPECIFICITY.
    9. "A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to HOOKLESS1-mediated signal transduction during early morphogenesis."
      Hamaguchi A., Yamashino T., Koizumi N., Kiba T., Kojima M., Sakakibara H., Mizuno T.
      Biosci. Biotechnol. Biochem. 72:2687-2696(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY.

    Entry informationi

    Entry nameiRADL2_ARATH
    AccessioniPrimary (citable) accession number: Q9SIJ5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 3, 2012
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 101 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Assigned as a member of the MYB-related gene family, I-box-binding-like subfamily.1 Publication

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3