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Q9SI64

- SPE1_ARATH

UniProt

Q9SI64 - SPE1_ARATH

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Protein

Arginine decarboxylase 1

Gene
SPE1, At2g16500, F1P15.12
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

Catalytic activityi

L-arginine = agmatine + CO2.

Cofactori

Pyridoxal phosphate.
Magnesium.

Pathwayi

GO - Molecular functioni

  1. arginine decarboxylase activity Source: UniProtKB-EC

GO - Biological processi

  1. arginine catabolic process Source: InterPro
  2. putrescine biosynthetic process Source: UniProtKB-KW
  3. response to cold Source: TAIR
  4. response to oxidative stress Source: TAIR
  5. response to salt stress Source: TAIR
  6. seed development Source: TAIR
  7. spermidine biosynthetic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Decarboxylase, Lyase

Keywords - Biological processi

Putrescine biosynthesis, Spermidine biosynthesis

Keywords - Ligandi

Magnesium, Pyridoxal phosphate

Enzyme and pathway databases

BioCyciARA:AT2G16500-MONOMER.
BRENDAi4.1.1.19. 399.
UniPathwayiUPA00186; UER00284.

Names & Taxonomyi

Protein namesi
Recommended name:
Arginine decarboxylase 1 (EC:4.1.1.19)
Short name:
ADC 1
Short name:
ADC-O
Short name:
ARGDC 1
Gene namesi
Name:SPE1
Ordered Locus Names:At2g16500
ORF Names:F1P15.12
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 2

Organism-specific databases

TAIRiAT2G16500.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 702702Arginine decarboxylase 1PRO_0000149946Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei136 – 1361N6-(pyridoxal phosphate)lysine By similarity

Proteomic databases

PaxDbiQ9SI64.
PRIDEiQ9SI64.

Expressioni

Gene expression databases

GenevestigatoriQ9SI64.

Structurei

3D structure databases

ProteinModelPortaliQ9SI64.
SMRiQ9SI64. Positions 43-628.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni320 – 33011Substrate-binding By similarityAdd
BLAST

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1166.
HOGENOMiHOG000029191.
InParanoidiQ9SI64.
KOiK01583.
OMAiCKGNPEA.
PhylomeDBiQ9SI64.

Family and domain databases

Gene3Di2.40.37.10. 2 hits.
3.20.20.10. 1 hit.
InterProiIPR009006. Ala_racemase/Decarboxylase_C.
IPR002985. Arg_decrbxlase.
IPR022643. De-COase2_C.
IPR022657. De-COase2_CS.
IPR022644. De-COase2_N.
IPR022653. De-COase2_pyr-phos_BS.
IPR000183. Orn/DAP/Arg_de-COase.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view]
PIRSFiPIRSF001336. Arg_decrbxlase. 1 hit.
PRINTSiPR01180. ARGDCRBXLASE.
PR01179. ODADCRBXLASE.
SUPFAMiSSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR01273. speA. 1 hit.
PROSITEiPS00878. ODR_DC_2_1. 1 hit.
PS00879. ODR_DC_2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SI64-1 [UniParc]FASTAAdd to Basket

« Hide

MPALAFVDTP IDTFSSIFTP SSVSTAVVDG SCHWSPSLSS SLYRIDGWGA    50
PYFAANSSGN ISVRPHGSNT LPHQDIDLMK VVKKVTDPSG LGLQLPLIVR 100
FPDVLKNRLE CLQSAFDYAI QSQGYDSHYQ GVYPVKCNQD RFIIEDIVEF 150
GSGFRFGLEA GSKPEILLAM SCLCKGNPEA FLVCNGFKDS EYISLALFGR 200
KLELNTVIVL EQEEELDLVI DLSQKMNVRP VIGLRAKLRT KHSGHFGSTS 250
GEKGKFGLTT VQILRVVRKL SQVGMLDCLQ LLHFHIGSQI PSTALLSDGV 300
AEAAQLYCEL VRLGAHMKVI DIGGGLGIDY DGSKSGESDL SVAYSLEEYA 350
AAVVASVRFV CDQKSVKHPV ICSESGRAIV SHHSVLIFEA VSAGQQHETP 400
TDHQFMLEGY SEEVRGDYEN LYGAAMRGDR ESCLLYVDQL KQRCVEGFKE 450
GSLGIEQLAG VDGLCEWVIK AIGASDPVLT YHVNLSVFTS IPDFWGIDQL 500
FPIVPIHKLD QRPAARGILS DLTCDSDGKI NKFIGGESSL PLHEMDNNGC 550
SGGRYYLGMF LGGAYEEALG GVHNLFGGPS VVRVLQSDGP HGFAVTRAVM 600
GQSSADVLRA MQHEPELMFQ TLKHRAEEPR NNNNKACGDK GNDKLVVASC 650
LAKSFNNMPY LSMETSTNAL TAAVNNLGVY YCDEAAAGGG GKGKDENWSY 700
FG 702
Length:702
Mass (Da):76,175
Last modified:May 1, 2000 - v1
Checksum:i8B9D182B2684BCA0
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti452 – 4521S → F in AAB09723. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U52851 mRNA. Translation: AAB09723.1.
AC007195 Genomic DNA. Translation: AAD26494.1.
CP002685 Genomic DNA. Translation: AEC06503.1.
BT008636 mRNA. Translation: AAP40453.1.
PIRiA84541.
S71239.
RefSeqiNP_179243.1. NM_127204.2.
UniGeneiAt.10173.

Genome annotation databases

EnsemblPlantsiAT2G16500.1; AT2G16500.1; AT2G16500.
GeneIDi816149.
KEGGiath:AT2G16500.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U52851 mRNA. Translation: AAB09723.1 .
AC007195 Genomic DNA. Translation: AAD26494.1 .
CP002685 Genomic DNA. Translation: AEC06503.1 .
BT008636 mRNA. Translation: AAP40453.1 .
PIRi A84541.
S71239.
RefSeqi NP_179243.1. NM_127204.2.
UniGenei At.10173.

3D structure databases

ProteinModelPortali Q9SI64.
SMRi Q9SI64. Positions 43-628.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PaxDbi Q9SI64.
PRIDEi Q9SI64.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT2G16500.1 ; AT2G16500.1 ; AT2G16500 .
GeneIDi 816149.
KEGGi ath:AT2G16500.

Organism-specific databases

TAIRi AT2G16500.

Phylogenomic databases

eggNOGi COG1166.
HOGENOMi HOG000029191.
InParanoidi Q9SI64.
KOi K01583.
OMAi CKGNPEA.
PhylomeDBi Q9SI64.

Enzyme and pathway databases

UniPathwayi UPA00186 ; UER00284 .
BioCyci ARA:AT2G16500-MONOMER.
BRENDAi 4.1.1.19. 399.

Gene expression databases

Genevestigatori Q9SI64.

Family and domain databases

Gene3Di 2.40.37.10. 2 hits.
3.20.20.10. 1 hit.
InterProi IPR009006. Ala_racemase/Decarboxylase_C.
IPR002985. Arg_decrbxlase.
IPR022643. De-COase2_C.
IPR022657. De-COase2_CS.
IPR022644. De-COase2_N.
IPR022653. De-COase2_pyr-phos_BS.
IPR000183. Orn/DAP/Arg_de-COase.
IPR029066. PLP-binding_barrel.
[Graphical view ]
Pfami PF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view ]
PIRSFi PIRSF001336. Arg_decrbxlase. 1 hit.
PRINTSi PR01180. ARGDCRBXLASE.
PR01179. ODADCRBXLASE.
SUPFAMi SSF51419. SSF51419. 1 hit.
TIGRFAMsi TIGR01273. speA. 1 hit.
PROSITEi PS00878. ODR_DC_2_1. 1 hit.
PS00879. ODR_DC_2_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Regulation of Arabidopsis thaliana (L.) Heynh Arginine decarboxylase by potassium deficiency stress."
    Watson M.B., Malmberg R.L.
    Plant Physiol. 111:1077-1083(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Columbia.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.

Entry informationi

Entry nameiSPE1_ARATH
AccessioniPrimary (citable) accession number: Q9SI64
Secondary accession number(s): Q38938
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 1, 2000
Last modified: June 11, 2014
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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