Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q9SI64 (SPE1_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 103. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Arginine decarboxylase 1

Short name=ADC 1
Short name=ADC-O
Short name=ARGDC 1
EC=4.1.1.19
Gene names
Name:SPE1
Ordered Locus Names:At2g16500
ORF Names:F1P15.12
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length702 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

L-arginine = agmatine + CO2.

Cofactor

Pyridoxal phosphate.

Magnesium.

Pathway

Amine and polyamine biosynthesis; agmatine biosynthesis; agmatine from L-arginine: step 1/1.

Sequence similarities

Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 702702Arginine decarboxylase 1
PRO_0000149946

Regions

Region320 – 33011Substrate-binding By similarity

Amino acid modifications

Modified residue1361N6-(pyridoxal phosphate)lysine By similarity

Experimental info

Sequence conflict4521S → F in AAB09723. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Q9SI64 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 8B9D182B2684BCA0

FASTA70276,175
        10         20         30         40         50         60 
MPALAFVDTP IDTFSSIFTP SSVSTAVVDG SCHWSPSLSS SLYRIDGWGA PYFAANSSGN 

        70         80         90        100        110        120 
ISVRPHGSNT LPHQDIDLMK VVKKVTDPSG LGLQLPLIVR FPDVLKNRLE CLQSAFDYAI 

       130        140        150        160        170        180 
QSQGYDSHYQ GVYPVKCNQD RFIIEDIVEF GSGFRFGLEA GSKPEILLAM SCLCKGNPEA 

       190        200        210        220        230        240 
FLVCNGFKDS EYISLALFGR KLELNTVIVL EQEEELDLVI DLSQKMNVRP VIGLRAKLRT 

       250        260        270        280        290        300 
KHSGHFGSTS GEKGKFGLTT VQILRVVRKL SQVGMLDCLQ LLHFHIGSQI PSTALLSDGV 

       310        320        330        340        350        360 
AEAAQLYCEL VRLGAHMKVI DIGGGLGIDY DGSKSGESDL SVAYSLEEYA AAVVASVRFV 

       370        380        390        400        410        420 
CDQKSVKHPV ICSESGRAIV SHHSVLIFEA VSAGQQHETP TDHQFMLEGY SEEVRGDYEN 

       430        440        450        460        470        480 
LYGAAMRGDR ESCLLYVDQL KQRCVEGFKE GSLGIEQLAG VDGLCEWVIK AIGASDPVLT 

       490        500        510        520        530        540 
YHVNLSVFTS IPDFWGIDQL FPIVPIHKLD QRPAARGILS DLTCDSDGKI NKFIGGESSL 

       550        560        570        580        590        600 
PLHEMDNNGC SGGRYYLGMF LGGAYEEALG GVHNLFGGPS VVRVLQSDGP HGFAVTRAVM 

       610        620        630        640        650        660 
GQSSADVLRA MQHEPELMFQ TLKHRAEEPR NNNNKACGDK GNDKLVVASC LAKSFNNMPY 

       670        680        690        700 
LSMETSTNAL TAAVNNLGVY YCDEAAAGGG GKGKDENWSY FG 

« Hide

References

« Hide 'large scale' references
[1]"Regulation of Arabidopsis thaliana (L.) Heynh Arginine decarboxylase by potassium deficiency stress."
Watson M.B., Malmberg R.L.
Plant Physiol. 111:1077-1083(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Strain: cv. Columbia.
[2]"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana."
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. expand/collapse author list , Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.
Nature 402:761-768(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[3]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[4]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U52851 mRNA. Translation: AAB09723.1.
AC007195 Genomic DNA. Translation: AAD26494.1.
CP002685 Genomic DNA. Translation: AEC06503.1.
BT008636 mRNA. Translation: AAP40453.1.
PIRA84541.
S71239.
RefSeqNP_179243.1. NM_127204.2.
UniGeneAt.10173.

3D structure databases

ProteinModelPortalQ9SI64.
SMRQ9SI64. Positions 43-628.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PaxDbQ9SI64.
PRIDEQ9SI64.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT2G16500.1; AT2G16500.1; AT2G16500.
GeneID816149.
KEGGath:AT2G16500.

Organism-specific databases

TAIRAT2G16500.

Phylogenomic databases

eggNOGCOG1166.
HOGENOMHOG000029191.
InParanoidQ9SI64.
KOK01583.
OMAANIRDIH.
PhylomeDBQ9SI64.
ProtClustDBPLN02439.

Enzyme and pathway databases

BioCycARA:AT2G16500-MONOMER.
BRENDA4.1.1.19. 399.
UniPathwayUPA00186; UER00284.

Gene expression databases

GenevestigatorQ9SI64.

Family and domain databases

Gene3D2.40.37.10. 2 hits.
InterProIPR009006. Ala_racemase/Decarboxylase_C.
IPR002985. Arg_decrbxlase.
IPR022643. De-COase2_C.
IPR022657. De-COase2_CS.
IPR022644. De-COase2_N.
IPR022653. De-COase2_pyr-phos_BS.
IPR000183. Orn/DAP/Arg_de-COase.
[Graphical view]
PfamPF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view]
PIRSFPIRSF001336. Arg_decrbxlase. 1 hit.
PRINTSPR01180. ARGDCRBXLASE.
PR01179. ODADCRBXLASE.
TIGRFAMsTIGR01273. speA. 1 hit.
PROSITEPS00878. ODR_DC_2_1. 1 hit.
PS00879. ODR_DC_2_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSPE1_ARATH
AccessionPrimary (citable) accession number: Q9SI64
Secondary accession number(s): Q38938
Entry history
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 1, 2000
Last modified: February 19, 2014
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names