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Q9SHG0

- TPS3_ARATH

UniProt

Q9SHG0 - TPS3_ARATH

Protein

Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3

Gene

TPS3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 77 (01 Oct 2014)
      Sequence version 3 (25 Jan 2012)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    UDP-glucose + D-glucose 6-phosphate = UDP + alpha,alpha-trehalose 6-phosphate.

    GO - Molecular functioni

    1. alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity Source: UniProtKB-EC

    GO - Biological processi

    1. trehalose biosynthetic process Source: InterPro

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Protein family/group databases

    CAZyiGT20. Glycosyltransferase Family 20.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3 (EC:2.4.1.15)
    Alternative name(s):
    Trehalose-6-phosphate synthase 3
    Short name:
    AtTPS3
    Gene namesi
    Name:TPS3
    Ordered Locus Names:At1g17000
    ORF Names:F20D23.30
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 1

    Organism-specific databases

    TAIRiAT1G17000.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 783783Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3PRO_0000324824Add
    BLAST

    Proteomic databases

    PaxDbiQ9SHG0.
    PRIDEiQ9SHG0.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9SHG0.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.AT1G17000.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9SHG0.
    SMRiQ9SHG0. Positions 69-454.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni11 – 456446GlycosyltransferaseAdd
    BLAST

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi714 – 7196Poly-Ser
    Compositional biasi773 – 7764Poly-Thr

    Sequence similaritiesi

    In the N-terminal section; belongs to the glycosyltransferase 20 family.Curated
    In the C-terminal section; belongs to the trehalose phosphatase family.Curated

    Phylogenomic databases

    eggNOGiCOG0380.
    InParanoidiQ9SHG0.
    KOiK16055.

    Family and domain databases

    Gene3Di3.40.50.1000. 3 hits.
    InterProiIPR001830. Glyco_trans_20.
    IPR023214. HAD-like_dom.
    IPR003337. Trehalose_PPase.
    [Graphical view]
    PfamiPF00982. Glyco_transf_20. 1 hit.
    PF02358. Trehalose_PPase. 1 hit.
    [Graphical view]
    SUPFAMiSSF56784. SSF56784. 2 hits.

    Sequencei

    Sequence statusi: Complete.

    Q9SHG0-1 [UniParc]FASTAAdd to Basket

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    MGYDNVCGER QTLLVVANRL PASAKRTGEH SWSLEMSPGG KFNLLVEKDA    50
    VSKSLAEMKC IPVFLNEVFD QYYNGYSNGI LWPILHHMGL PQEYDHDTIK 100
    TFETQYDAYK KANRMFLDVI KENYKDGDIV WCQDYHLMFL PQYLKEYNNK 150
    IKVGWFLHSP FPSSEIYKTL PSRSELLRSV LAADLISFHT YDFARHFVNT 200
    CTRILGVEGT HEGVVYQGRV TRVVVLPMGI YPNRFIKTCK LPEVIQQMNE 250
    LKDRFSGKKV ILGVDRLDMI KGIPQKYLGF EKFLDENPNW RDKIVLVQIA 300
    VPTRNEVPEY QKLKNQVHRL VGRINGRFGS VSSLPIHHMD CSVDSNYLCA 350
    LYAISDVMLV TSLRDGLNLV SHEFVACQEA KRGVLILSEF AGAGQSLGAG 400
    ALLVNPWNVT EVSSAIKKAL NMPYEERETR HRVNFKYVKT HSAEKWGFDF 450
    LSELNDAFDE SELQIRKIPH ELPQQDVIQR YSLSNNRLII LGFYGTITEP 500
    RNSLSKEMDL KLNPELKETL KALCNDPKTT VVVLSRSGKN ILDKNFGEYK 550
    IWLAAENGMF LKHTTEEWVT NMPQNMNLDW VDGLKNVFKY FTDRTPRSFF 600
    EASKTSLVWN YEYADVEFGR AQARDLLQYL WAGPISNASA EVVRGKYSVE 650
    VHAIGVTKEP EIGHILGEIV HKKAMTTPID YVFCSGYFLE KDEDIYTFFE 700
    SEILSPKLSH ETRSKSSSSN HSLEKKVSLN VLDLKQENYF STAIGQARTK 750
    ARYVVDSSHN VVNLLHKLAV ANTTTTSVKK PNV 783
    Length:783
    Mass (Da):89,483
    Last modified:January 25, 2012 - v3
    Checksum:i262F05A09098887E
    GO

    Sequence cautioni

    The sequence AAD50035.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC007651 Genomic DNA. Translation: AAD50035.1. Sequence problems.
    CP002684 Genomic DNA. Translation: AEE29529.1.
    PIRiF86305.
    RefSeqiNP_173143.4. NM_101560.5.
    UniGeneiAt.51643.

    Genome annotation databases

    EnsemblPlantsiAT1G17000.1; AT1G17000.1; AT1G17000.
    GeneIDi838270.
    KEGGiath:AT1G17000.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC007651 Genomic DNA. Translation: AAD50035.1 . Sequence problems.
    CP002684 Genomic DNA. Translation: AEE29529.1 .
    PIRi F86305.
    RefSeqi NP_173143.4. NM_101560.5.
    UniGenei At.51643.

    3D structure databases

    ProteinModelPortali Q9SHG0.
    SMRi Q9SHG0. Positions 69-454.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT1G17000.1-P.

    Protein family/group databases

    CAZyi GT20. Glycosyltransferase Family 20.

    Proteomic databases

    PaxDbi Q9SHG0.
    PRIDEi Q9SHG0.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT1G17000.1 ; AT1G17000.1 ; AT1G17000 .
    GeneIDi 838270.
    KEGGi ath:AT1G17000.

    Organism-specific databases

    TAIRi AT1G17000.

    Phylogenomic databases

    eggNOGi COG0380.
    InParanoidi Q9SHG0.
    KOi K16055.

    Gene expression databases

    Genevestigatori Q9SHG0.

    Family and domain databases

    Gene3Di 3.40.50.1000. 3 hits.
    InterProi IPR001830. Glyco_trans_20.
    IPR023214. HAD-like_dom.
    IPR003337. Trehalose_PPase.
    [Graphical view ]
    Pfami PF00982. Glyco_transf_20. 1 hit.
    PF02358. Trehalose_PPase. 1 hit.
    [Graphical view ]
    SUPFAMi SSF56784. SSF56784. 2 hits.
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
      Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
      , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
      Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "An unexpected plethora of trehalose biosynthesis genes in Arabidopsis thaliana."
      Leyman B., Van Dijck P., Thevelein J.M.
      Trends Plant Sci. 6:510-513(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiTPS3_ARATH
    AccessioniPrimary (citable) accession number: Q9SHG0
    Secondary accession number(s): F4I628
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 18, 2008
    Last sequence update: January 25, 2012
    Last modified: October 1, 2014
    This is version 77 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3