Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Pentatricopeptide repeat-containing protein At1g63400

Gene

At1g63400

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g63400
Gene namesi
Ordered Locus Names:At1g63400
ORF Names:F2K11.22
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G63400.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 577577Pentatricopeptide repeat-containing protein At1g63400PRO_0000342843Add
BLAST

Proteomic databases

PaxDbiQ9SH26.
PRIDEiQ9SH26.

PTM databases

iPTMnetiQ9SH26.

Expressioni

Gene expression databases

GenevisibleiQ9SH26. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G63400.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SH26.
SMRiQ9SH26. Positions 54-573.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati49 – 8335PPR 1Add
BLAST
Repeati84 – 11835PPR 2Add
BLAST
Repeati119 – 15335PPR 3Add
BLAST
Repeati154 – 18835PPR 4Add
BLAST
Repeati189 – 22335PPR 5Add
BLAST
Repeati224 – 25835PPR 6Add
BLAST
Repeati259 – 29335PPR 7Add
BLAST
Repeati294 – 32835PPR 8Add
BLAST
Repeati329 – 36335PPR 9Add
BLAST
Repeati364 – 39835PPR 10Add
BLAST
Repeati399 – 43335PPR 11Add
BLAST
Repeati434 – 46835PPR 12Add
BLAST
Repeati469 – 50335PPR 13Add
BLAST
Repeati504 – 53835PPR 14Add
BLAST
Repeati539 – 57335PPR 15Add
BLAST

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated
Contains 15 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000015176.
InParanoidiQ9SH26.
OMAiDSANEPK.
PhylomeDBiQ9SH26.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF12854. PPR_1. 1 hit.
PF13041. PPR_2. 6 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 13 hits.
PROSITEiPS51375. PPR. 15 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SH26-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRISISSVVS STTSRFVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS
60 70 80 90 100
GDYREILRNG LHSMKLDDAI GLFGGMVKSR PLPSIFEFNK LLSAIAKMKK
110 120 130 140 150
FDLVISLGEK MQRLGISHNL YTYNILINCF CRRSQISLAL ALLGKMMKLG
160 170 180 190 200
YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
210 220 230 240 250
FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD IDLAFNLLNK
260 270 280 290 300
MEAAKIEANV VIYSTVIDSL CKYRHEDDAL NLFTEMENKG VRPNVITYSS
310 320 330 340 350
LISCLCNYER WSDASRLLSD MIERKINPNV VTFNALIDAF VKEGKLVEAE
360 370 380 390 400
KLYDEMIKRS IDPDIFTYSS LINGFCMHDR LDEAKHMFEL MISKDCFPNV
410 420 430 440 450
VTYNTLINGF CKAKRIDEGV ELFREMSQRG LVGNTVTYTT LIHGFFQARD
460 470 480 490 500
CDNAQMVFKQ MVSDGVHPNI MTYNTLLDGL CKNGKLEKAM VVFEYLQRSK
510 520 530 540 550
MEPTIYTYNI MIEGMCKAGK VEDGWDLFCS LSLKGVKPDV IIYNTMISGF
560 570
CRKGLKEEAD ALFRKMREDG PLPDSGT
Length:577
Mass (Da):64,952
Last modified:May 1, 2000 - v1
Checksum:i20C27E84FE3DCA42
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC008047 Genomic DNA. Translation: AAF19704.1.
CP002684 Genomic DNA. Translation: AEE34095.1.
PIRiH96659.
RefSeqiNP_176529.1. NM_105019.1.
UniGeneiAt.52343.

Genome annotation databases

EnsemblPlantsiAT1G63400.1; AT1G63400.1; AT1G63400.
GeneIDi842646.
GrameneiAT1G63400.1; AT1G63400.1; AT1G63400.
KEGGiath:AT1G63400.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC008047 Genomic DNA. Translation: AAF19704.1.
CP002684 Genomic DNA. Translation: AEE34095.1.
PIRiH96659.
RefSeqiNP_176529.1. NM_105019.1.
UniGeneiAt.52343.

3D structure databases

ProteinModelPortaliQ9SH26.
SMRiQ9SH26. Positions 54-573.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G63400.1.

PTM databases

iPTMnetiQ9SH26.

Proteomic databases

PaxDbiQ9SH26.
PRIDEiQ9SH26.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G63400.1; AT1G63400.1; AT1G63400.
GeneIDi842646.
GrameneiAT1G63400.1; AT1G63400.1; AT1G63400.
KEGGiath:AT1G63400.

Organism-specific databases

TAIRiAT1G63400.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000015176.
InParanoidiQ9SH26.
OMAiDSANEPK.
PhylomeDBiQ9SH26.

Miscellaneous databases

PROiQ9SH26.

Gene expression databases

GenevisibleiQ9SH26. AT.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF12854. PPR_1. 1 hit.
PF13041. PPR_2. 6 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 13 hits.
PROSITEiPS51375. PPR. 15 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
    Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
    Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiPP102_ARATH
AccessioniPrimary (citable) accession number: Q9SH26
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: May 1, 2000
Last modified: June 8, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.