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Protein

Pentatricopeptide repeat-containing protein At1g63400

Gene

At1g63400

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g63400
Gene namesi
Ordered Locus Names:At1g63400
ORF Names:F2K11.22
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G63400.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003428431 – 577Pentatricopeptide repeat-containing protein At1g63400Add BLAST577

Proteomic databases

PaxDbiQ9SH26.

PTM databases

iPTMnetiQ9SH26.

Expressioni

Gene expression databases

GenevisibleiQ9SH26. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G63400.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SH26.
SMRiQ9SH26.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati49 – 83PPR 1Add BLAST35
Repeati84 – 118PPR 2Add BLAST35
Repeati119 – 153PPR 3Add BLAST35
Repeati154 – 188PPR 4Add BLAST35
Repeati189 – 223PPR 5Add BLAST35
Repeati224 – 258PPR 6Add BLAST35
Repeati259 – 293PPR 7Add BLAST35
Repeati294 – 328PPR 8Add BLAST35
Repeati329 – 363PPR 9Add BLAST35
Repeati364 – 398PPR 10Add BLAST35
Repeati399 – 433PPR 11Add BLAST35
Repeati434 – 468PPR 12Add BLAST35
Repeati469 – 503PPR 13Add BLAST35
Repeati504 – 538PPR 14Add BLAST35
Repeati539 – 573PPR 15Add BLAST35

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated
Contains 15 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000015176.
InParanoidiQ9SH26.
OMAiDSANEPK.
OrthoDBiEOG093606HI.
PhylomeDBiQ9SH26.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF12854. PPR_1. 1 hit.
PF13041. PPR_2. 6 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 13 hits.
PROSITEiPS51375. PPR. 15 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SH26-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRISISSVVS STTSRFVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS
60 70 80 90 100
GDYREILRNG LHSMKLDDAI GLFGGMVKSR PLPSIFEFNK LLSAIAKMKK
110 120 130 140 150
FDLVISLGEK MQRLGISHNL YTYNILINCF CRRSQISLAL ALLGKMMKLG
160 170 180 190 200
YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
210 220 230 240 250
FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD IDLAFNLLNK
260 270 280 290 300
MEAAKIEANV VIYSTVIDSL CKYRHEDDAL NLFTEMENKG VRPNVITYSS
310 320 330 340 350
LISCLCNYER WSDASRLLSD MIERKINPNV VTFNALIDAF VKEGKLVEAE
360 370 380 390 400
KLYDEMIKRS IDPDIFTYSS LINGFCMHDR LDEAKHMFEL MISKDCFPNV
410 420 430 440 450
VTYNTLINGF CKAKRIDEGV ELFREMSQRG LVGNTVTYTT LIHGFFQARD
460 470 480 490 500
CDNAQMVFKQ MVSDGVHPNI MTYNTLLDGL CKNGKLEKAM VVFEYLQRSK
510 520 530 540 550
MEPTIYTYNI MIEGMCKAGK VEDGWDLFCS LSLKGVKPDV IIYNTMISGF
560 570
CRKGLKEEAD ALFRKMREDG PLPDSGT
Length:577
Mass (Da):64,952
Last modified:May 1, 2000 - v1
Checksum:i20C27E84FE3DCA42
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC008047 Genomic DNA. Translation: AAF19704.1.
CP002684 Genomic DNA. Translation: AEE34095.1.
PIRiH96659.
RefSeqiNP_176529.1. NM_105019.2.

Genome annotation databases

EnsemblPlantsiAT1G63400.1; AT1G63400.1; AT1G63400.
GeneIDi842646.
GrameneiAT1G63400.1; AT1G63400.1; AT1G63400.
KEGGiath:AT1G63400.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC008047 Genomic DNA. Translation: AAF19704.1.
CP002684 Genomic DNA. Translation: AEE34095.1.
PIRiH96659.
RefSeqiNP_176529.1. NM_105019.2.

3D structure databases

ProteinModelPortaliQ9SH26.
SMRiQ9SH26.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G63400.1.

PTM databases

iPTMnetiQ9SH26.

Proteomic databases

PaxDbiQ9SH26.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G63400.1; AT1G63400.1; AT1G63400.
GeneIDi842646.
GrameneiAT1G63400.1; AT1G63400.1; AT1G63400.
KEGGiath:AT1G63400.

Organism-specific databases

TAIRiAT1G63400.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000015176.
InParanoidiQ9SH26.
OMAiDSANEPK.
OrthoDBiEOG093606HI.
PhylomeDBiQ9SH26.

Miscellaneous databases

PROiQ9SH26.

Gene expression databases

GenevisibleiQ9SH26. AT.

Family and domain databases

Gene3Di1.25.40.10. 2 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF12854. PPR_1. 1 hit.
PF13041. PPR_2. 6 hits.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 13 hits.
PROSITEiPS51375. PPR. 15 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPP102_ARATH
AccessioniPrimary (citable) accession number: Q9SH26
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: May 1, 2000
Last modified: November 30, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.