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Q9SFC7

- FB135_ARATH

UniProt

Q9SFC7 - FB135_ARATH

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Protein

F-box protein At3g07870

Gene

At3g07870

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
F-box protein At3g07870
Gene namesi
Ordered Locus Names:At3g07870
ORF Names:F17A17.21
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 3

Organism-specific databases

TAIRiAT3G07870.

Subcellular locationi

GO - Cellular componenti

  1. plasmodesma Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 417417F-box protein At3g07870PRO_0000283406Add
BLAST

Proteomic databases

PRIDEiQ9SFC7.

Expressioni

Gene expression databases

GenevestigatoriQ9SFC7.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G07870.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ9SFC7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini22 – 6847F-boxPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 F-box domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG323347.
HOGENOMiHOG000090481.
InParanoidiQ9SFC7.
OMAiPKPDCGG.
PhylomeDBiQ9SFC7.

Family and domain databases

InterProiIPR013187. F-box-assoc_dom_typ3.
IPR017451. F-box-assoc_interact_dom.
IPR001810. F-box_dom.
[Graphical view]
PfamiPF00646. F-box. 1 hit.
PF08268. FBA_3. 1 hit.
[Graphical view]
SMARTiSM00256. FBOX. 1 hit.
[Graphical view]
SUPFAMiSSF81383. SSF81383. 1 hit.
TIGRFAMsiTIGR01640. F_box_assoc_1. 1 hit.
PROSITEiPS50181. FBOX. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9SFC7 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASEKSFKKR KITDDVDGVG VGGGLESLPE DIIADIFSRL PISSIARLMF
60 70 80 90 100
VCRSWRSVLT QHGRLSSSSS SPTKPCLLLH CDSPIRNGLH FLDLSEEEKR
110 120 130 140 150
IKTKKFTLRF ASSMPEFDVV GSCNGLLCLS DSLYNDSLYL YNPFTTNSLE
160 170 180 190 200
LPECSNKYHD QELVFGFGFH EMTKEYKVLK IVYFRGSSSN NNGIYRGRGR
210 220 230 240 250
IQYKQSEVQI LTLSSKTTDQ SLSWRSLGKA PYKFVKRSSE ALVNGRLHFV
260 270 280 290 300
TRPRRHVPDR KFVSFDLEDE EFKEIPKPDC GGLNRTNHRL VNLKGCLCAV
310 320 330 340 350
VYGNYGKLDI WVMKTYGVKE SWGKEYSIGT YLPKGLKQNL DRPMWIWKNA
360 370 380 390 400
ENGKVVRVLC LLENGEILLE YKSRVLVAYD PKLGKFKDLL FHGLPNWFHT
410
VVHAGTLSWF DTPLDLW
Length:417
Mass (Da):47,682
Last modified:May 1, 2000 - v1
Checksum:iC8473D7C25F4CD82
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC013483 Genomic DNA. Translation: AAF21197.1.
CP002686 Genomic DNA. Translation: AEE74613.1.
AF424614 mRNA. Translation: AAL11607.1.
BT025979 mRNA. Translation: ABG25068.1.
RefSeqiNP_566322.1. NM_111666.3.
UniGeneiAt.25406.

Genome annotation databases

EnsemblPlantsiAT3G07870.1; AT3G07870.1; AT3G07870.
GeneIDi819978.
KEGGiath:AT3G07870.

Cross-referencesi

Web resourcesi

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC013483 Genomic DNA. Translation: AAF21197.1 .
CP002686 Genomic DNA. Translation: AEE74613.1 .
AF424614 mRNA. Translation: AAL11607.1 .
BT025979 mRNA. Translation: ABG25068.1 .
RefSeqi NP_566322.1. NM_111666.3.
UniGenei At.25406.

3D structure databases

ProteinModelPortali Q9SFC7.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3702.AT3G07870.1-P.

Proteomic databases

PRIDEi Q9SFC7.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT3G07870.1 ; AT3G07870.1 ; AT3G07870 .
GeneIDi 819978.
KEGGi ath:AT3G07870.

Organism-specific databases

TAIRi AT3G07870.

Phylogenomic databases

eggNOGi NOG323347.
HOGENOMi HOG000090481.
InParanoidi Q9SFC7.
OMAi PKPDCGG.
PhylomeDBi Q9SFC7.

Gene expression databases

Genevestigatori Q9SFC7.

Family and domain databases

InterProi IPR013187. F-box-assoc_dom_typ3.
IPR017451. F-box-assoc_interact_dom.
IPR001810. F-box_dom.
[Graphical view ]
Pfami PF00646. F-box. 1 hit.
PF08268. FBA_3. 1 hit.
[Graphical view ]
SMARTi SM00256. FBOX. 1 hit.
[Graphical view ]
SUPFAMi SSF81383. SSF81383. 1 hit.
TIGRFAMsi TIGR01640. F_box_assoc_1. 1 hit.
PROSITEi PS50181. FBOX. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Arabidopsis ORF clones."
    Shinn P., Chen H., Kim C.J., Quinitio C., Ecker J.R.
    Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.

Entry informationi

Entry nameiFB135_ARATH
AccessioniPrimary (citable) accession number: Q9SFC7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 3, 2007
Last sequence update: May 1, 2000
Last modified: October 1, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3