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Q9SFC7

- FB135_ARATH

UniProt

Q9SFC7 - FB135_ARATH

Protein

F-box protein At3g07870

Gene

At3g07870

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 76 (01 Oct 2014)
      Sequence version 1 (01 May 2000)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    F-box protein At3g07870
    Gene namesi
    Ordered Locus Names:At3g07870
    ORF Names:F17A17.21
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3

    Organism-specific databases

    TAIRiAT3G07870.

    Subcellular locationi

    GO - Cellular componenti

    1. plasmodesma Source: TAIR

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 417417F-box protein At3g07870PRO_0000283406Add
    BLAST

    Proteomic databases

    PRIDEiQ9SFC7.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9SFC7.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.AT3G07870.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9SFC7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini22 – 6847F-boxPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 F-box domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiNOG323347.
    HOGENOMiHOG000090481.
    InParanoidiQ9SFC7.
    OMAiPKPDCGG.
    PhylomeDBiQ9SFC7.

    Family and domain databases

    InterProiIPR013187. F-box-assoc_dom_typ3.
    IPR017451. F-box-assoc_interact_dom.
    IPR001810. F-box_dom.
    [Graphical view]
    PfamiPF00646. F-box. 1 hit.
    PF08268. FBA_3. 1 hit.
    [Graphical view]
    SMARTiSM00256. FBOX. 1 hit.
    [Graphical view]
    SUPFAMiSSF81383. SSF81383. 1 hit.
    TIGRFAMsiTIGR01640. F_box_assoc_1. 1 hit.
    PROSITEiPS50181. FBOX. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9SFC7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASEKSFKKR KITDDVDGVG VGGGLESLPE DIIADIFSRL PISSIARLMF    50
    VCRSWRSVLT QHGRLSSSSS SPTKPCLLLH CDSPIRNGLH FLDLSEEEKR 100
    IKTKKFTLRF ASSMPEFDVV GSCNGLLCLS DSLYNDSLYL YNPFTTNSLE 150
    LPECSNKYHD QELVFGFGFH EMTKEYKVLK IVYFRGSSSN NNGIYRGRGR 200
    IQYKQSEVQI LTLSSKTTDQ SLSWRSLGKA PYKFVKRSSE ALVNGRLHFV 250
    TRPRRHVPDR KFVSFDLEDE EFKEIPKPDC GGLNRTNHRL VNLKGCLCAV 300
    VYGNYGKLDI WVMKTYGVKE SWGKEYSIGT YLPKGLKQNL DRPMWIWKNA 350
    ENGKVVRVLC LLENGEILLE YKSRVLVAYD PKLGKFKDLL FHGLPNWFHT 400
    VVHAGTLSWF DTPLDLW 417
    Length:417
    Mass (Da):47,682
    Last modified:May 1, 2000 - v1
    Checksum:iC8473D7C25F4CD82
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC013483 Genomic DNA. Translation: AAF21197.1.
    CP002686 Genomic DNA. Translation: AEE74613.1.
    AF424614 mRNA. Translation: AAL11607.1.
    BT025979 mRNA. Translation: ABG25068.1.
    RefSeqiNP_566322.1. NM_111666.3.
    UniGeneiAt.25406.

    Genome annotation databases

    EnsemblPlantsiAT3G07870.1; AT3G07870.1; AT3G07870.
    GeneIDi819978.
    KEGGiath:AT3G07870.

    Cross-referencesi

    Web resourcesi

    PlantsUBQ

    A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC013483 Genomic DNA. Translation: AAF21197.1 .
    CP002686 Genomic DNA. Translation: AEE74613.1 .
    AF424614 mRNA. Translation: AAL11607.1 .
    BT025979 mRNA. Translation: ABG25068.1 .
    RefSeqi NP_566322.1. NM_111666.3.
    UniGenei At.25406.

    3D structure databases

    ProteinModelPortali Q9SFC7.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT3G07870.1-P.

    Proteomic databases

    PRIDEi Q9SFC7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT3G07870.1 ; AT3G07870.1 ; AT3G07870 .
    GeneIDi 819978.
    KEGGi ath:AT3G07870.

    Organism-specific databases

    TAIRi AT3G07870.

    Phylogenomic databases

    eggNOGi NOG323347.
    HOGENOMi HOG000090481.
    InParanoidi Q9SFC7.
    OMAi PKPDCGG.
    PhylomeDBi Q9SFC7.

    Gene expression databases

    Genevestigatori Q9SFC7.

    Family and domain databases

    InterProi IPR013187. F-box-assoc_dom_typ3.
    IPR017451. F-box-assoc_interact_dom.
    IPR001810. F-box_dom.
    [Graphical view ]
    Pfami PF00646. F-box. 1 hit.
    PF08268. FBA_3. 1 hit.
    [Graphical view ]
    SMARTi SM00256. FBOX. 1 hit.
    [Graphical view ]
    SUPFAMi SSF81383. SSF81383. 1 hit.
    TIGRFAMsi TIGR01640. F_box_assoc_1. 1 hit.
    PROSITEi PS50181. FBOX. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
      Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
      , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    4. "Arabidopsis ORF clones."
      Shinn P., Chen H., Kim C.J., Quinitio C., Ecker J.R.
      Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.

    Entry informationi

    Entry nameiFB135_ARATH
    AccessioniPrimary (citable) accession number: Q9SFC7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 3, 2007
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 76 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3