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Q9SFC7 (FB135_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 67. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
F-box protein At3g07870
Gene names
Ordered Locus Names:At3g07870
ORF Names:F17A17.21
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length417 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 F-box domain.

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentplasmodesma

Inferred from direct assay PubMed 21533090. Source: TAIR

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 417417F-box protein At3g07870
PRO_0000283406

Regions

Domain22 – 6847F-box

Sequences

Sequence LengthMass (Da)Tools
Q9SFC7 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: C8473D7C25F4CD82

FASTA41747,682
        10         20         30         40         50         60 
MASEKSFKKR KITDDVDGVG VGGGLESLPE DIIADIFSRL PISSIARLMF VCRSWRSVLT 

        70         80         90        100        110        120 
QHGRLSSSSS SPTKPCLLLH CDSPIRNGLH FLDLSEEEKR IKTKKFTLRF ASSMPEFDVV 

       130        140        150        160        170        180 
GSCNGLLCLS DSLYNDSLYL YNPFTTNSLE LPECSNKYHD QELVFGFGFH EMTKEYKVLK 

       190        200        210        220        230        240 
IVYFRGSSSN NNGIYRGRGR IQYKQSEVQI LTLSSKTTDQ SLSWRSLGKA PYKFVKRSSE 

       250        260        270        280        290        300 
ALVNGRLHFV TRPRRHVPDR KFVSFDLEDE EFKEIPKPDC GGLNRTNHRL VNLKGCLCAV 

       310        320        330        340        350        360 
VYGNYGKLDI WVMKTYGVKE SWGKEYSIGT YLPKGLKQNL DRPMWIWKNA ENGKVVRVLC 

       370        380        390        400        410 
LLENGEILLE YKSRVLVAYD PKLGKFKDLL FHGLPNWFHT VVHAGTLSWF DTPLDLW

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. expand/collapse author list , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[4]"Arabidopsis ORF clones."
Shinn P., Chen H., Kim C.J., Quinitio C., Ecker J.R.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
+Additional computationally mapped references.

Web resources

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AC013483 Genomic DNA. Translation: AAF21197.1.
CP002686 Genomic DNA. Translation: AEE74613.1.
AF424614 mRNA. Translation: AAL11607.1.
BT025979 mRNA. Translation: ABG25068.1.
IPIIPI00535744.
RefSeqNP_566322.1. NM_111666.3.
UniGeneAt.25406.

3D structure databases

ProteinModelPortalQ9SFC7.
SMRQ9SFC7. Positions 27-58.
ModBaseSearch...

Protein-protein interaction databases

STRING3702.AT3G07870.1-P.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G07870.1; AT3G07870.1; AT3G07870.
GeneID819978.
KEGGath:AT3G07870.

Organism-specific databases

TAIRAt3g07870.

Phylogenomic databases

eggNOGNOG323347.
HOGENOMHOG000090481.
InParanoidQ9SFC7.
OMADSLYNDS.
PhylomeDBQ9SFC7.
ProtClustDBCLSN2688159.

Gene expression databases

GenevestigatorQ9SFC7.

Family and domain databases

InterProIPR013187. F-box-assoc_dom_typ3.
IPR017451. F-box-assoc_interact_dom.
IPR001810. F-box_dom_cyclin-like.
[Graphical view]
PfamPF00646. F-box. 1 hit.
PF08268. FBA_3. 1 hit.
[Graphical view]
SMARTSM00256. FBOX. 1 hit.
[Graphical view]
SUPFAMSSF81383. F-box_dom_Skp2-like. 1 hit.
TIGRFAMsTIGR01640. F_box_assoc_1. 1 hit.
PROSITEPS50181. FBOX. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameFB135_ARATH
AccessionPrimary (citable) accession number: Q9SFC7
Entry history
Integrated into UniProtKB/Swiss-Prot: April 3, 2007
Last sequence update: May 1, 2000
Last modified: May 1, 2013
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·Documents