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Protein

Ras-related protein RABD2c

Gene

RABD2C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER) (By similarity).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi15 – 23GTPBy similarity9
Nucleotide bindingi33 – 40GTPBy similarity8
Nucleotide bindingi63 – 67GTPBy similarity5
Nucleotide bindingi121 – 124GTPBy similarity4
Nucleotide bindingi151 – 153GTPBy similarity3

GO - Molecular functioni

GO - Biological processi

  • ER to Golgi vesicle-mediated transport Source: GO_Central
  • pollen development Source: TAIR
  • pollen tube growth Source: TAIR
  • protein transport Source: UniProtKB-KW

Keywordsi

Biological processER-Golgi transport, Protein transport, Transport
LigandGTP-binding, Nucleotide-binding

Enzyme and pathway databases

ReactomeiR-ATH-204005 COPII-mediated vesicle transport
R-ATH-6807878 COPI-mediated anterograde transport
R-ATH-6811434 COPI-dependent Golgi-to-ER retrograde traffic
R-ATH-8873719 RAB geranylgeranylation
R-ATH-8876198 RAB GEFs exchange GTP for GDP on RABs

Names & Taxonomyi

Protein namesi
Recommended name:
Ras-related protein RABD2c
Short name:
AtRABD2c
Alternative name(s):
Ras-related protein Rab1C
Short name:
AtRab1C
Gene namesi
Name:RABD2C
Synonyms:RAB1C
Ordered Locus Names:At4g17530
ORF Names:dl4800c, FCAALL.87
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G17530
TAIRilocus:2129161 AT4G17530

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell membrane, Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004073311 – 202Ras-related protein RABD2cAdd BLAST202

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi199S-geranylgeranyl cysteineBy similarity1
Lipidationi200S-geranylgeranyl cysteineBy similarity1

Keywords - PTMi

Lipoprotein, Prenylation

Proteomic databases

PaxDbiQ9SEH3
PRIDEiQ9SEH3

PTM databases

iPTMnetiQ9SEH3

Expressioni

Gene expression databases

ExpressionAtlasiQ9SEH3 differential
GenevisibleiQ9SEH3 AT

Interactioni

Protein-protein interaction databases

IntActiQ9SEH3, 1 interactor
MINTiQ9SEH3
STRINGi3702.AT4G17530.1

Structurei

3D structure databases

ProteinModelPortaliQ9SEH3
SMRiQ9SEH3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi37 – 45Effector regionBy similarity9

Sequence similaritiesi

Belongs to the small GTPase superfamily. Rab family.Curated

Phylogenomic databases

eggNOGiKOG0084 Eukaryota
ENOG410XQN5 LUCA
HOGENOMiHOG000233968
InParanoidiQ9SEH3
KOiK07874
OMAiYNNIKQW
OrthoDBiEOG09360N3E
PhylomeDBiQ9SEH3

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR005225 Small_GTP-bd_dom
IPR001806 Small_GTPase
PfamiView protein in Pfam
PF00071 Ras, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00231 small_GTP, 1 hit
PROSITEiView protein in PROSITE
PS51419 RAB, 1 hit

Sequencei

Sequence statusi: Complete.

Q9SEH3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV
60 70 80 90 100
EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDLESFNNVK
110 120 130 140 150
QWLNEIDRYA SENVNKLLVG NKCDLTSQKV VSTETAKAFA DELGIPFLET
160 170 180 190 200
SAKNATNVEE AFMAMTAAIK TRMASQPAGG SKPPTVQIRG QPVNQQSGCC

SS
Length:202
Mass (Da):22,318
Last modified:May 1, 2000 - v1
Checksum:i954FA24C3110FC12
GO

Sequence cautioni

The sequence CAB10533 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti200C → A in AAL31108 (PubMed:14593172).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97343 Genomic DNA Translation: CAB10533.1 Sequence problems.
AL161546 Genomic DNA Translation: CAB78756.1
CP002687 Genomic DNA Translation: AEE83907.1
AF127134 mRNA Translation: AAF22133.1
AY052204 mRNA Translation: AAK97675.1
AY060495 mRNA Translation: AAL31108.1
AK227290 mRNA Translation: BAE99310.1
PIRiH71444
RefSeqiNP_193486.1, NM_117859.4
UniGeneiAt.22483
At.24811
At.48871

Genome annotation databases

EnsemblPlantsiAT4G17530.1; AT4G17530.1; AT4G17530
GeneIDi827468
GrameneiAT4G17530.1; AT4G17530.1; AT4G17530
KEGGiath:AT4G17530

Similar proteinsi

Entry informationi

Entry nameiRAD2C_ARATH
AccessioniPrimary (citable) accession number: Q9SEH3
Secondary accession number(s): O23594, Q8W4S8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 3, 2011
Last sequence update: May 1, 2000
Last modified: May 23, 2018
This is version 128 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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