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Q9SCV3

- BGAL9_ARATH

UniProt

Q9SCV3 - BGAL9_ARATH

Protein

Beta-galactosidase 9

Gene

BGAL9

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 101 (01 Oct 2014)
      Sequence version 1 (01 May 2000)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei194 – 1941Proton donorSequence Analysis
    Active sitei263 – 2631NucleophileSequence Analysis

    GO - Molecular functioni

    1. beta-galactosidase activity Source: UniProtKB-EC
    2. carbohydrate binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Enzyme and pathway databases

    BioCyciARA:AT2G32810-MONOMER.
    ARA:GQT-2715-MONOMER.

    Protein family/group databases

    CAZyiGH35. Glycoside Hydrolase Family 35.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Beta-galactosidase 9 (EC:3.2.1.23)
    Short name:
    Lactase 9
    Gene namesi
    Name:BGAL9
    Ordered Locus Names:At2g32810
    ORF Names:F24L7.5
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 2

    Organism-specific databases

    TAIRiAT2G32810.

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: UniProtKB-SubCell
    2. plant-type cell wall Source: TAIR
    3. vacuolar membrane Source: TAIR
    4. vacuole Source: TAIR

    Keywords - Cellular componenti

    Apoplast, Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 3030Sequence AnalysisAdd
    BLAST
    Chaini31 – 887857Beta-galactosidase 9PRO_5000065883Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi37 – 371N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi463 – 4631N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi485 – 4851N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi496 – 4961N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi527 – 5271N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi785 – 7851N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi881 – 8811N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Proteomic databases

    PaxDbiQ9SCV3.
    PRIDEiQ9SCV3.

    Expressioni

    Tissue specificityi

    Ubiquitous, with higher expression levels in siliques.2 Publications

    Gene expression databases

    ArrayExpressiQ9SCV3.
    GenevestigatoriQ9SCV3.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9SCV3.
    SMRiQ9SCV3. Positions 36-755.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini791 – 87787SUEL-type lectinPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 35 family.Curated
    Contains 1 SUEL-type lectin domain.PROSITE-ProRule annotation

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG1874.
    HOGENOMiHOG000239919.
    InParanoidiQ9SCV3.
    OMAiSAGIHYP.
    PhylomeDBiQ9SCV3.

    Family and domain databases

    Gene3Di2.60.120.260. 1 hit.
    3.20.20.80. 1 hit.
    InterProiIPR008979. Galactose-bd-like.
    IPR019801. Glyco_hydro_35_CS.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR001944. Glycoside_Hdrlase_35.
    IPR017853. Glycoside_hydrolase_SF.
    IPR000922. Lectin_gal-bd_dom.
    [Graphical view]
    PANTHERiPTHR23421. PTHR23421. 1 hit.
    PfamiPF02140. Gal_Lectin. 1 hit.
    PF01301. Glyco_hydro_35. 1 hit.
    [Graphical view]
    PRINTSiPR00742. GLHYDRLASE35.
    SUPFAMiSSF49785. SSF49785. 3 hits.
    SSF51445. SSF51445. 1 hit.
    PROSITEiPS01182. GLYCOSYL_HYDROL_F35. 1 hit.
    PS50228. SUEL_LECTIN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    This entry describes 1 isoform i produced by alternative splicing. Align

    Note: A number of isoforms are produced. According to EST sequences.

    Isoform 1 (identifier: Q9SCV3-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MAESIRTFSL QWRILSLIIA LLVYFPILSG SYFKPFNVSY DHRALIIAGK    50
    RRMLVSAGIH YPRATPEMWS DLIAKSKEGG ADVVQTYVFW NGHEPVKGQY 100
    NFEGRYDLVK FVKLIGSSGL YLHLRIGPYV CAEWNFGGFP VWLRDIPGIE 150
    FRTDNEPFKK EMQKFVTKIV DLMREAKLFC WQGGPIIMLQ IENEYGDVEK 200
    SYGQKGKDYV KWAASMALGL GAGVPWVMCK QTDAPENIID ACNGYYCDGF 250
    KPNSRTKPVL WTEDWDGWYT KWGGSLPHRP AEDLAFAVAR FYQRGGSFQN 300
    YYMYFGGTNF GRTSGGPFYI TSYDYDAPLD EYGLRSEPKW GHLKDLHAAI 350
    KLCEPALVAA DAPQYRKLGS KQEAHIYHGD GETGGKVCAA FLANIDEHKS 400
    AHVKFNGQSY TLPPWSVSIL PDCRHVAFNT AKVGAQTSVK TVESARPSLG 450
    SMSILQKVVR QDNVSYISKS WMALKEPIGI WGENNFTFQG LLEHLNVTKD 500
    RSDYLWHKTR ISVSEDDISF WKKNGPNSTV SIDSMRDVLR VFVNKQLAGS 550
    IVGHWVKAVQ PVRFIQGNND LLLLTQTVGL QNYGAFLEKD GAGFRGKAKL 600
    TGFKNGDLDL SKSSWTYQVG LKGEADKIYT VEHNEKAEWS TLETDASPSI 650
    FMWYKTYFDP PAGTDPVVLN LESMGRGQAW VNGQHIGRYW NIISQKDGCD 700
    RTCDYRGAYN SDKCTTNCGK PTQTRYHVPR SWLKPSSNLL VLFEETGGNP 750
    FKISVKTVTA GILCGQVSES HYPPLRKWST PDYINGTMSI NSVAPEVHLH 800
    CEDGHVISSI EFASYGTPRG SCDGFSIGKC HASNSLSIVS EACKGRNSCF 850
    IEVSNTAFIS DPCSGTLKTL AVMSRCSPSQ NMSDLSF 887
    Length:887
    Mass (Da):99,199
    Last modified:May 1, 2000 - v1
    Checksum:i51FC80516B1C85EC
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ270305 mRNA. Translation: CAB64745.1.
    AC003974 Genomic DNA. Translation: AAC04500.2.
    CP002685 Genomic DNA. Translation: AEC08744.1.
    PIRiT00787.
    RefSeqiNP_565755.1. NM_128841.4. [Q9SCV3-1]
    UniGeneiAt.66358.
    At.704.

    Genome annotation databases

    EnsemblPlantsiAT2G32810.1; AT2G32810.1; AT2G32810. [Q9SCV3-1]
    GeneIDi817842.
    KEGGiath:AT2G32810.

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ270305 mRNA. Translation: CAB64745.1 .
    AC003974 Genomic DNA. Translation: AAC04500.2 .
    CP002685 Genomic DNA. Translation: AEC08744.1 .
    PIRi T00787.
    RefSeqi NP_565755.1. NM_128841.4. [Q9SCV3-1 ]
    UniGenei At.66358.
    At.704.

    3D structure databases

    ProteinModelPortali Q9SCV3.
    SMRi Q9SCV3. Positions 36-755.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    CAZyi GH35. Glycoside Hydrolase Family 35.

    Proteomic databases

    PaxDbi Q9SCV3.
    PRIDEi Q9SCV3.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT2G32810.1 ; AT2G32810.1 ; AT2G32810 . [Q9SCV3-1 ]
    GeneIDi 817842.
    KEGGi ath:AT2G32810.

    Organism-specific databases

    GeneFarmi 510. 90.
    TAIRi AT2G32810.

    Phylogenomic databases

    eggNOGi COG1874.
    HOGENOMi HOG000239919.
    InParanoidi Q9SCV3.
    OMAi SAGIHYP.
    PhylomeDBi Q9SCV3.

    Enzyme and pathway databases

    BioCyci ARA:AT2G32810-MONOMER.
    ARA:GQT-2715-MONOMER.

    Gene expression databases

    ArrayExpressi Q9SCV3.
    Genevestigatori Q9SCV3.

    Family and domain databases

    Gene3Di 2.60.120.260. 1 hit.
    3.20.20.80. 1 hit.
    InterProi IPR008979. Galactose-bd-like.
    IPR019801. Glyco_hydro_35_CS.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR001944. Glycoside_Hdrlase_35.
    IPR017853. Glycoside_hydrolase_SF.
    IPR000922. Lectin_gal-bd_dom.
    [Graphical view ]
    PANTHERi PTHR23421. PTHR23421. 1 hit.
    Pfami PF02140. Gal_Lectin. 1 hit.
    PF01301. Glyco_hydro_35. 1 hit.
    [Graphical view ]
    PRINTSi PR00742. GLHYDRLASE35.
    SUPFAMi SSF49785. SSF49785. 3 hits.
    SSF51445. SSF51445. 1 hit.
    PROSITEi PS01182. GLYCOSYL_HYDROL_F35. 1 hit.
    PS50228. SUEL_LECTIN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The beta-galactosidases are encoding by a multigene family in Arabidopsis thaliana."
      Gy I., Kreis M., Lecharny A.
      Submitted (OCT-1999) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    3. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    4. "Apoplastic glycosidases active against xyloglucan oligosaccharides of Arabidopsis thaliana."
      Iglesias N., Abelenda J.A., Rodino M., Sampedro J., Revilla G., Zarra I.
      Plant Cell Physiol. 47:55-63(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: TISSUE SPECIFICITY.
    5. "Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35."
      Ahn Y.O., Zheng M., Bevan D.R., Esen A., Shiu S.-H., Benson J., Peng H.-P., Miller J.T., Cheng C.-L., Poulton J.E., Shih M.-C.
      Phytochemistry 68:1510-1520(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: TISSUE SPECIFICITY, GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiBGAL9_ARATH
    AccessioniPrimary (citable) accession number: Q9SCV3
    Secondary accession number(s): O48836
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 10, 2007
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 101 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3