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Q9SCU9

- BGA13_ARATH

UniProt

Q9SCU9 - BGA13_ARATH

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Protein

Beta-galactosidase 13

Gene
BGAL13, At2g16730, T24I21.14
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei200 – 2001Proton donor Reviewed prediction
Active sitei271 – 2711Nucleophile Reviewed prediction

GO - Molecular functioni

  1. beta-galactosidase activity Source: TAIR
  2. carbohydrate binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Enzyme and pathway databases

BioCyciARA:AT2G16730-MONOMER.

Protein family/group databases

CAZyiGH35. Glycoside Hydrolase Family 35.

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-galactosidase 13 (EC:3.2.1.23)
Short name:
Lactase 13
Gene namesi
Name:BGAL13
Ordered Locus Names:At2g16730
ORF Names:T24I21.14
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 2

Organism-specific databases

TAIRiAT2G16730.

Subcellular locationi

Secretedextracellular spaceapoplast Reviewed prediction

GO - Cellular componenti

  1. apoplast Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Apoplast, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2727 Reviewed predictionAdd
BLAST
Chaini28 – 848821Beta-galactosidase 13PRO_5000065886Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi107 – 1071N-linked (GlcNAc...) Reviewed prediction
Glycosylationi272 – 2721N-linked (GlcNAc...) Reviewed prediction
Glycosylationi303 – 3031N-linked (GlcNAc...) Reviewed prediction
Glycosylationi376 – 3761N-linked (GlcNAc...) Reviewed prediction
Glycosylationi398 – 3981N-linked (GlcNAc...) Reviewed prediction
Glycosylationi782 – 7821N-linked (GlcNAc...) Reviewed prediction
Glycosylationi787 – 7871N-linked (GlcNAc...) Reviewed prediction
Glycosylationi817 – 8171N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ9SCU9.
PRIDEiQ9SCU9.

Expressioni

Tissue specificityi

Ubiquitous, with higher expression levels in roots, flowers and siliques.1 Publication

Gene expression databases

GenevestigatoriQ9SCU9.

Structurei

3D structure databases

ProteinModelPortaliQ9SCU9.
SMRiQ9SCU9. Positions 44-708.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini754 – 84390SUEL-type lectinAdd
BLAST

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG1874.
HOGENOMiHOG000239919.
InParanoidiQ9SCU9.
OMAiQWAANMA.
PhylomeDBiQ9SCU9.

Family and domain databases

Gene3Di2.60.120.260. 2 hits.
3.20.20.80. 1 hit.
InterProiIPR008979. Galactose-bd-like.
IPR006104. Glyco_hydro_2_N.
IPR019801. Glyco_hydro_35_CS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR001944. Glycoside_Hdrlase_35.
IPR017853. Glycoside_hydrolase_SF.
IPR000922. Lectin_gal-bd_dom.
[Graphical view]
PANTHERiPTHR23421. PTHR23421. 1 hit.
PfamiPF02140. Gal_Lectin. 1 hit.
PF02837. Glyco_hydro_2_N. 1 hit.
PF01301. Glyco_hydro_35. 1 hit.
[Graphical view]
PRINTSiPR00742. GLHYDRLASE35.
SUPFAMiSSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEiPS01182. GLYCOSYL_HYDROL_F35. 1 hit.
PS50228. SUEL_LECTIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SCU9-1 [UniParc]FASTAAdd to Basket

« Hide

MKIHSSDHSW LLLAVLVILL SFSGALSSDD KEKKTKSVDK KKEVTYDGTS    50
LIINGNRELL YSGSIHYPRS TPEMWPNIIK RAKQGGLNTI QTYVFWNVHE 100
PEQGKFNFSG RADLVKFIKL IEKNGLYVTL RLGPFIQAEW THGGLPYWLR 150
EVPGIFFRTD NEPFKEHTER YVKVVLDMMK EEKLFASQGG PIILGQIENE 200
YSAVQRAYKE DGLNYIKWAS KLVHSMDLGI PWVMCKQNDA PDPMINACNG 250
RHCGDTFPGP NKDNKPSLWT ENWTTQFRVF GDPPAQRSVE DIAYSVARFF 300
SKNGTHVNYY MYHGGTNFGR TSAHYVTTRY YDDAPLDEFG LEREPKYGHL 350
KHLHNALNLC KKALLWGQPR VEKPSNETEI RYYEQPGTKV CAAFLANNNT 400
EAAEKIKFRG KEYLIPHRSI SILPDCKTVV YNTGEIISHH TSRNFMKSKK 450
ANKNFDFKVF TESVPSKIKG DSFIPVELYG LTKDESDYGW YTTSFKIDDN 500
DLSKKKGGKP NLRIASLGHA LHVWLNGEYL GNGHGSHEEK SFVFQKPVTL 550
KEGENHLTML GVLTGFPDSG SYMEHRYTGP RSVSILGLGS GTLDLTEENK 600
WGNKVGMEGE RLGIHAEEGL KKVKWEKASG KEPGMTWYQT YFDAPESQSA 650
AAIRMNGMGK GLIWVNGEGV GRYWMSFLSP LGQPTQIEYH IPRSFLKPKK 700
NLLVIFEEEP NVKPELIDFV IVNRDTVCSY IGENYTPSVR HWTRKNDQVQ 750
AITDDVHLTA NLKCSGTKKI SAVEFASFGN PNGTCGNFTL GSCNAPVSKK 800
VVEKYCLGKA ECVIPVNKST FEQDKKDSCP KVEKKLAVQV KCGRDKKN 848
Length:848
Mass (Da):95,900
Last modified:May 1, 2000 - v1
Checksum:i1AF1AF48C1FA5F1B
GO

Sequence cautioni

The sequence AAD24606.1 differs from that shown. Reason: Erroneous gene model prediction.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ270309 mRNA. Translation: CAB64749.1.
AC005825 Genomic DNA. Translation: AAD24606.1. Sequence problems.
CP002685 Genomic DNA. Translation: AEC06532.1.
PIRiE84543.
RefSeqiNP_179264.2. NM_127225.2.
UniGeneiAt.707.

Genome annotation databases

EnsemblPlantsiAT2G16730.1; AT2G16730.1; AT2G16730.
GeneIDi816174.
KEGGiath:AT2G16730.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ270309 mRNA. Translation: CAB64749.1 .
AC005825 Genomic DNA. Translation: AAD24606.1 . Sequence problems.
CP002685 Genomic DNA. Translation: AEC06532.1 .
PIRi E84543.
RefSeqi NP_179264.2. NM_127225.2.
UniGenei At.707.

3D structure databases

ProteinModelPortali Q9SCU9.
SMRi Q9SCU9. Positions 44-708.
ModBasei Search...
MobiDBi Search...

Protein family/group databases

CAZyi GH35. Glycoside Hydrolase Family 35.

Proteomic databases

PaxDbi Q9SCU9.
PRIDEi Q9SCU9.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT2G16730.1 ; AT2G16730.1 ; AT2G16730 .
GeneIDi 816174.
KEGGi ath:AT2G16730.

Organism-specific databases

GeneFarmi 515. 90.
TAIRi AT2G16730.

Phylogenomic databases

eggNOGi COG1874.
HOGENOMi HOG000239919.
InParanoidi Q9SCU9.
OMAi QWAANMA.
PhylomeDBi Q9SCU9.

Enzyme and pathway databases

BioCyci ARA:AT2G16730-MONOMER.

Gene expression databases

Genevestigatori Q9SCU9.

Family and domain databases

Gene3Di 2.60.120.260. 2 hits.
3.20.20.80. 1 hit.
InterProi IPR008979. Galactose-bd-like.
IPR006104. Glyco_hydro_2_N.
IPR019801. Glyco_hydro_35_CS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR001944. Glycoside_Hdrlase_35.
IPR017853. Glycoside_hydrolase_SF.
IPR000922. Lectin_gal-bd_dom.
[Graphical view ]
PANTHERi PTHR23421. PTHR23421. 1 hit.
Pfami PF02140. Gal_Lectin. 1 hit.
PF02837. Glyco_hydro_2_N. 1 hit.
PF01301. Glyco_hydro_35. 1 hit.
[Graphical view ]
PRINTSi PR00742. GLHYDRLASE35.
SUPFAMi SSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEi PS01182. GLYCOSYL_HYDROL_F35. 1 hit.
PS50228. SUEL_LECTIN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The beta-galactosidases are encoding by a multigene family in Arabidopsis thaliana."
    Gy I., Kreis M., Lecharny A.
    Submitted (OCT-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Apoplastic glycosidases active against xyloglucan oligosaccharides of Arabidopsis thaliana."
    Iglesias N., Abelenda J.A., Rodino M., Sampedro J., Revilla G., Zarra I.
    Plant Cell Physiol. 47:55-63(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY.
  5. "Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35."
    Ahn Y.O., Zheng M., Bevan D.R., Esen A., Shiu S.-H., Benson J., Peng H.-P., Miller J.T., Cheng C.-L., Poulton J.E., Shih M.-C.
    Phytochemistry 68:1510-1520(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiBGA13_ARATH
AccessioniPrimary (citable) accession number: Q9SCU9
Secondary accession number(s): Q9SLE5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 10, 2007
Last sequence update: May 1, 2000
Last modified: June 11, 2014
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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