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Q9SCU9

- BGA13_ARATH

UniProt

Q9SCU9 - BGA13_ARATH

Protein

Beta-galactosidase 13

Gene

BGAL13

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 98 (01 Oct 2014)
      Sequence version 1 (01 May 2000)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei200 – 2001Proton donorSequence Analysis
    Active sitei271 – 2711NucleophileSequence Analysis

    GO - Molecular functioni

    1. beta-galactosidase activity Source: TAIR
    2. carbohydrate binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Enzyme and pathway databases

    BioCyciARA:AT2G16730-MONOMER.

    Protein family/group databases

    CAZyiGH35. Glycoside Hydrolase Family 35.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Beta-galactosidase 13 (EC:3.2.1.23)
    Short name:
    Lactase 13
    Gene namesi
    Name:BGAL13
    Ordered Locus Names:At2g16730
    ORF Names:T24I21.14
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 2

    Organism-specific databases

    TAIRiAT2G16730.

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Apoplast, Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2727Sequence AnalysisAdd
    BLAST
    Chaini28 – 848821Beta-galactosidase 13PRO_5000065886Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi107 – 1071N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi272 – 2721N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi303 – 3031N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi376 – 3761N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi398 – 3981N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi782 – 7821N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi787 – 7871N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi817 – 8171N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Proteomic databases

    PaxDbiQ9SCU9.
    PRIDEiQ9SCU9.

    Expressioni

    Tissue specificityi

    Ubiquitous, with higher expression levels in roots, flowers and siliques.1 Publication

    Gene expression databases

    GenevestigatoriQ9SCU9.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9SCU9.
    SMRiQ9SCU9. Positions 44-708.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini754 – 84390SUEL-type lectinPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 35 family.Curated
    Contains 1 SUEL-type lectin domain.PROSITE-ProRule annotation

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG1874.
    HOGENOMiHOG000239919.
    InParanoidiQ9SCU9.
    OMAiQWAANMA.
    PhylomeDBiQ9SCU9.

    Family and domain databases

    Gene3Di2.60.120.260. 2 hits.
    3.20.20.80. 1 hit.
    InterProiIPR008979. Galactose-bd-like.
    IPR006104. Glyco_hydro_2_N.
    IPR019801. Glyco_hydro_35_CS.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR001944. Glycoside_Hdrlase_35.
    IPR017853. Glycoside_hydrolase_SF.
    IPR000922. Lectin_gal-bd_dom.
    [Graphical view]
    PANTHERiPTHR23421. PTHR23421. 1 hit.
    PfamiPF02140. Gal_Lectin. 1 hit.
    PF02837. Glyco_hydro_2_N. 1 hit.
    PF01301. Glyco_hydro_35. 1 hit.
    [Graphical view]
    PRINTSiPR00742. GLHYDRLASE35.
    SUPFAMiSSF49785. SSF49785. 2 hits.
    SSF51445. SSF51445. 1 hit.
    PROSITEiPS01182. GLYCOSYL_HYDROL_F35. 1 hit.
    PS50228. SUEL_LECTIN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q9SCU9-1 [UniParc]FASTAAdd to Basket

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    MKIHSSDHSW LLLAVLVILL SFSGALSSDD KEKKTKSVDK KKEVTYDGTS    50
    LIINGNRELL YSGSIHYPRS TPEMWPNIIK RAKQGGLNTI QTYVFWNVHE 100
    PEQGKFNFSG RADLVKFIKL IEKNGLYVTL RLGPFIQAEW THGGLPYWLR 150
    EVPGIFFRTD NEPFKEHTER YVKVVLDMMK EEKLFASQGG PIILGQIENE 200
    YSAVQRAYKE DGLNYIKWAS KLVHSMDLGI PWVMCKQNDA PDPMINACNG 250
    RHCGDTFPGP NKDNKPSLWT ENWTTQFRVF GDPPAQRSVE DIAYSVARFF 300
    SKNGTHVNYY MYHGGTNFGR TSAHYVTTRY YDDAPLDEFG LEREPKYGHL 350
    KHLHNALNLC KKALLWGQPR VEKPSNETEI RYYEQPGTKV CAAFLANNNT 400
    EAAEKIKFRG KEYLIPHRSI SILPDCKTVV YNTGEIISHH TSRNFMKSKK 450
    ANKNFDFKVF TESVPSKIKG DSFIPVELYG LTKDESDYGW YTTSFKIDDN 500
    DLSKKKGGKP NLRIASLGHA LHVWLNGEYL GNGHGSHEEK SFVFQKPVTL 550
    KEGENHLTML GVLTGFPDSG SYMEHRYTGP RSVSILGLGS GTLDLTEENK 600
    WGNKVGMEGE RLGIHAEEGL KKVKWEKASG KEPGMTWYQT YFDAPESQSA 650
    AAIRMNGMGK GLIWVNGEGV GRYWMSFLSP LGQPTQIEYH IPRSFLKPKK 700
    NLLVIFEEEP NVKPELIDFV IVNRDTVCSY IGENYTPSVR HWTRKNDQVQ 750
    AITDDVHLTA NLKCSGTKKI SAVEFASFGN PNGTCGNFTL GSCNAPVSKK 800
    VVEKYCLGKA ECVIPVNKST FEQDKKDSCP KVEKKLAVQV KCGRDKKN 848
    Length:848
    Mass (Da):95,900
    Last modified:May 1, 2000 - v1
    Checksum:i1AF1AF48C1FA5F1B
    GO

    Sequence cautioni

    The sequence AAD24606.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ270309 mRNA. Translation: CAB64749.1.
    AC005825 Genomic DNA. Translation: AAD24606.1. Sequence problems.
    CP002685 Genomic DNA. Translation: AEC06532.1.
    PIRiE84543.
    RefSeqiNP_179264.2. NM_127225.2.
    UniGeneiAt.707.

    Genome annotation databases

    EnsemblPlantsiAT2G16730.1; AT2G16730.1; AT2G16730.
    GeneIDi816174.
    KEGGiath:AT2G16730.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ270309 mRNA. Translation: CAB64749.1 .
    AC005825 Genomic DNA. Translation: AAD24606.1 . Sequence problems.
    CP002685 Genomic DNA. Translation: AEC06532.1 .
    PIRi E84543.
    RefSeqi NP_179264.2. NM_127225.2.
    UniGenei At.707.

    3D structure databases

    ProteinModelPortali Q9SCU9.
    SMRi Q9SCU9. Positions 44-708.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    CAZyi GH35. Glycoside Hydrolase Family 35.

    Proteomic databases

    PaxDbi Q9SCU9.
    PRIDEi Q9SCU9.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT2G16730.1 ; AT2G16730.1 ; AT2G16730 .
    GeneIDi 816174.
    KEGGi ath:AT2G16730.

    Organism-specific databases

    GeneFarmi 515. 90.
    TAIRi AT2G16730.

    Phylogenomic databases

    eggNOGi COG1874.
    HOGENOMi HOG000239919.
    InParanoidi Q9SCU9.
    OMAi QWAANMA.
    PhylomeDBi Q9SCU9.

    Enzyme and pathway databases

    BioCyci ARA:AT2G16730-MONOMER.

    Gene expression databases

    Genevestigatori Q9SCU9.

    Family and domain databases

    Gene3Di 2.60.120.260. 2 hits.
    3.20.20.80. 1 hit.
    InterProi IPR008979. Galactose-bd-like.
    IPR006104. Glyco_hydro_2_N.
    IPR019801. Glyco_hydro_35_CS.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR001944. Glycoside_Hdrlase_35.
    IPR017853. Glycoside_hydrolase_SF.
    IPR000922. Lectin_gal-bd_dom.
    [Graphical view ]
    PANTHERi PTHR23421. PTHR23421. 1 hit.
    Pfami PF02140. Gal_Lectin. 1 hit.
    PF02837. Glyco_hydro_2_N. 1 hit.
    PF01301. Glyco_hydro_35. 1 hit.
    [Graphical view ]
    PRINTSi PR00742. GLHYDRLASE35.
    SUPFAMi SSF49785. SSF49785. 2 hits.
    SSF51445. SSF51445. 1 hit.
    PROSITEi PS01182. GLYCOSYL_HYDROL_F35. 1 hit.
    PS50228. SUEL_LECTIN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The beta-galactosidases are encoding by a multigene family in Arabidopsis thaliana."
      Gy I., Kreis M., Lecharny A.
      Submitted (OCT-1999) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    3. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    4. "Apoplastic glycosidases active against xyloglucan oligosaccharides of Arabidopsis thaliana."
      Iglesias N., Abelenda J.A., Rodino M., Sampedro J., Revilla G., Zarra I.
      Plant Cell Physiol. 47:55-63(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: TISSUE SPECIFICITY.
    5. "Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35."
      Ahn Y.O., Zheng M., Bevan D.R., Esen A., Shiu S.-H., Benson J., Peng H.-P., Miller J.T., Cheng C.-L., Poulton J.E., Shih M.-C.
      Phytochemistry 68:1510-1520(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiBGA13_ARATH
    AccessioniPrimary (citable) accession number: Q9SCU9
    Secondary accession number(s): Q9SLE5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 10, 2007
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 98 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3