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Protein

Cell division control protein 48 homolog D

Gene

CDC48D

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi249 – 256ATPSequence analysis8
Nucleotide bindingi522 – 529ATPSequence analysis8

GO - Molecular functioni

GO - Biological processi

  • cell cycle Source: UniProtKB-KW
  • cell division Source: UniProtKB-KW
  • positive regulation of protein catabolic process Source: TAIR
  • protein transport Source: UniProtKB-KW
  • response to cadmium ion Source: TAIR

Keywordsi

Biological processCell cycle, Cell division, Protein transport, Transport
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

ReactomeiR-ATH-110320 Translesion Synthesis by POLH
R-ATH-3371511 HSF1 activation
R-ATH-382556 ABC-family proteins mediated transport
R-ATH-532668 N-glycan trimming in the ER and Calnexin/Calreticulin cycle
R-ATH-5358346 Hedgehog ligand biogenesis
R-ATH-5689877 Josephin domain DUBs
R-ATH-5689896 Ovarian tumor domain proteases
R-ATH-6798695 Neutrophil degranulation
R-ATH-8876725 Protein methylation

Names & Taxonomyi

Protein namesi
Recommended name:
Cell division control protein 48 homolog D
Short name:
AtCDC48d
Alternative name(s):
Transitional endoplasmic reticulum ATPase D
Gene namesi
Name:CDC48D
Ordered Locus Names:At3g53230
ORF Names:T4D2.160
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G53230
TAIRilocus:2101933 AT3G53230

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedCombined sources
ChainiPRO_00000845822 – 815Cell division control protein 48 homolog DAdd BLAST814

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanineCombined sources1
Modified residuei42PhosphoserineBy similarity1
Modified residuei720PhosphoserineCombined sources1

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

PaxDbiQ9SCN8
PRIDEiQ9SCN8

PTM databases

iPTMnetiQ9SCN8

Expressioni

Gene expression databases

ExpressionAtlasiQ9SCN8 baseline and differential
GenevisibleiQ9SCN8 AT

Interactioni

Protein-protein interaction databases

BioGridi9806, 3 interactors
STRINGi3702.AT3G53230.1

Structurei

3D structure databases

ProteinModelPortaliQ9SCN8
SMRiQ9SCN8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the AAA ATPase family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0730 Eukaryota
COG0464 LUCA
HOGENOMiHOG000223224
InParanoidiQ9SCN8
KOiK13525
OMAiIANECQT
OrthoDBiEOG093602AN
PhylomeDBiQ9SCN8

Family and domain databases

InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR005938 AAA_ATPase_CDC48
IPR009010 Asp_de-COase-like_dom_sf
IPR003959 ATPase_AAA_core
IPR003960 ATPase_AAA_CS
IPR004201 Cdc48_dom2
IPR029067 CDC48_domain_2-like_sf
IPR003338 CDC4_N-term_subdom
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF00004 AAA, 2 hits
PF02933 CDC48_2, 1 hit
PF02359 CDC48_N, 1 hit
SMARTiView protein in SMART
SM00382 AAA, 2 hits
SM01072 CDC48_2, 1 hit
SM01073 CDC48_N, 1 hit
SUPFAMiSSF50692 SSF50692, 1 hit
SSF52540 SSF52540, 2 hits
SSF54585 SSF54585, 1 hit
TIGRFAMsiTIGR01243 CDC48, 1 hit
PROSITEiView protein in PROSITE
PS00674 AAA, 2 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9SCN8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANQAESSDS KGTKKDFSTA ILEKKKAANR LVVDEAINDD NSVVSLHPDT
60 70 80 90 100
MEKLQLFRGD TILIKGKKRK DTVCIALADE TCDEPKIRMN KVVRSNLRVR
110 120 130 140 150
LGDVISVHQC PDVKYGNRVH ILPLDDTIEG VSGNIFDAYL KPYFLEAYRP
160 170 180 190 200
VRKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPDTEIFCE GEPIKREDEE
210 220 230 240 250
RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP
260 270 280 290 300
PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
310 320 330 340 350
APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVMGA
360 370 380 390 400
TNRPNSIDPA LRRFGRFDRE IDIGVPDEIG RLEVLRIHTK NMKLAEDVDL
410 420 430 440 450
ERVSKDTHGY VGADLAALCT EAALQCIREK MDVIDLDDEE IDAEILNSMA
460 470 480 490 500
VSNDHFQTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
510 520 530 540 550
VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE
560 570 580 590 600
LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GNSVGDAGGA
610 620 630 640 650
ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP
660 670 680 690 700
LPDEESRYQI FKSCLRKSPV AKDVDLRALA KYTQGFSGAD ITEICQRSCK
710 720 730 740 750
YAIRENIEKD IEKERKRAES PEAMEEDEEE IAEIKAGHFE ESMKYARRSV
760 770 780 790 800
SDADIRKYQA FAQTLQQSRG FGSEFRFPDA PTGTTGAFPG AAATVGGVDP
810
FATSGGAADD DDLYS
Length:815
Mass (Da):90,340
Last modified:May 1, 2000 - v1
Checksum:i8F2817396748B6CC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132958 Genomic DNA Translation: CAB64226.1
CP002686 Genomic DNA Translation: AEE79050.1
AK228801 mRNA Translation: BAF00697.1
PIRiT46169
RefSeqiNP_190891.1, NM_115183.4
UniGeneiAt.23168

Genome annotation databases

EnsemblPlantsiAT3G53230.1; AT3G53230.1; AT3G53230
GeneIDi824489
GrameneiAT3G53230.1; AT3G53230.1; AT3G53230
KEGGiath:AT3G53230

Similar proteinsi

Entry informationi

Entry nameiCD48D_ARATH
AccessioniPrimary (citable) accession number: Q9SCN8
Secondary accession number(s): Q0WQA2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 2003
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 137 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health