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Protein

40S ribosomal protein S2-4

Gene

RPS2D

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: InterPro
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-ATH-72702 Ribosomal scanning and start codon recognition
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S2-4
Gene namesi
Name:RPS2D
Ordered Locus Names:At3g57490
ORF Names:T8H10.90
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G57490
TAIRilocus:2103539 AT3G57490

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002501761 – 27640S ribosomal protein S2-4Add BLAST276

Proteomic databases

PaxDbiQ9SCM3
PRIDEiQ9SCM3

PTM databases

iPTMnetiQ9SCM3

Expressioni

Gene expression databases

ExpressionAtlasiQ9SCM3 baseline and differential
GenevisibleiQ9SCM3 AT

Interactioni

Protein-protein interaction databases

BioGridi10232, 2 interactors
IntActiQ9SCM3, 1 interactor
STRINGi3702.AT3G57490.1

Structurei

3D structure databases

ProteinModelPortaliQ9SCM3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini87 – 150S5 DRBMPROSITE-ProRule annotationAdd BLAST64

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi5 – 37Gly-richAdd BLAST33

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0877 Eukaryota
COG0098 LUCA
HOGENOMiHOG000072596
InParanoidiQ9SCM3
KOiK02981
OMAiEDCYTQS
OrthoDBiEOG09360L08
PhylomeDBiQ9SCM3

Family and domain databases

Gene3Di3.30.230.10, 1 hit
InterProiView protein in InterPro
IPR000851 Ribosomal_S5
IPR005324 Ribosomal_S5_C
IPR020568 Ribosomal_S5_D2-typ_fold
IPR014721 Ribosomal_S5_D2-typ_fold_subgr
IPR005711 Ribosomal_S5_euk/arc
IPR013810 Ribosomal_S5_N
IPR018192 Ribosomal_S5_N_CS
PANTHERiPTHR13718 PTHR13718, 1 hit
PfamiView protein in Pfam
PF00333 Ribosomal_S5, 1 hit
PF03719 Ribosomal_S5_C, 1 hit
SUPFAMiSSF54211 SSF54211, 1 hit
TIGRFAMsiTIGR01020 uS5_euk_arch, 1 hit
PROSITEiView protein in PROSITE
PS00585 RIBOSOMAL_S5, 1 hit
PS50881 S5_DSRBD, 1 hit

Sequencei

Sequence statusi: Complete.

Q9SCM3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK
60 70 80 90 100
LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
110 120 130 140 150
TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI
160 170 180 190 200
RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
210 220 230 240 250
FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP
260 270
YQEHTDFLLI PPGVKISEVV VDKSVE
Length:276
Mass (Da):30,116
Last modified:May 1, 2000 - v1
Checksum:i6BFF69F96D15922D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL133248 Genomic DNA Translation: CAB66106.1
CP002686 Genomic DNA Translation: AEE79662.1
BT006200 mRNA Translation: AAP12849.1
AY084252 mRNA Translation: AAM60846.1
AK228054 mRNA Translation: BAF00015.1
PIRiT46185
RefSeqiNP_191308.1, NM_115609.3
UniGeneiAt.34827

Genome annotation databases

EnsemblPlantsiAT3G57490.1; AT3G57490.1; AT3G57490
GeneIDi824916
GrameneiAT3G57490.1; AT3G57490.1; AT3G57490
KEGGiath:AT3G57490

Similar proteinsi

Entry informationi

Entry nameiRS24_ARATH
AccessioniPrimary (citable) accession number: Q9SCM3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 3, 2006
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 116 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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