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Protein

Probable WRKY transcription factor 40

Gene

WRKY40

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi140 – 206WRKYPROSITE-ProRule annotationAdd BLAST67

GO - Molecular functioni

  • sequence-specific DNA binding Source: InterPro
  • transcription factor activity, sequence-specific DNA binding Source: TAIR
  • transcription regulatory region DNA binding Source: CACAO

GO - Biological processi

  • defense response to bacterium Source: TAIR
  • defense response to fungus Source: TAIR
  • negative regulation of transcription, DNA-templated Source: CACAO
  • regulation of defense response Source: TAIR
  • response to chitin Source: TAIR
  • response to molecule of bacterial origin Source: TAIR
  • response to salicylic acid Source: TAIR
  • response to wounding Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Probable WRKY transcription factor 40
Alternative name(s):
WRKY DNA-binding protein 40
Gene namesi
Name:WRKY40
Ordered Locus Names:At1g80840
ORF Names:F23A5.19
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G80840.
TAIRilocus:2025687. AT1G80840.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

  • nucleus Source: TAIR

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001336811 – 302Probable WRKY transcription factor 40Add BLAST302

Proteomic databases

PaxDbiQ9SAH7.

PTM databases

iPTMnetiQ9SAH7.

Expressioni

Gene expression databases

ExpressionAtlasiQ9SAH7. baseline and differential.
GenevisibleiQ9SAH7. AT.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
WRKY18Q9C5T47EBI-1993363,EBI-1993349

Protein-protein interaction databases

BioGridi29641. 9 interactors.
IntActiQ9SAH7. 5 interactors.
STRINGi3702.AT1G80840.1.

Structurei

3D structure databases

ProteinModelPortaliQ9SAH7.
SMRiQ9SAH7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG410IXIT. Eukaryota.
ENOG410YHES. LUCA.
HOGENOMiHOG000052516.
InParanoidiQ9SAH7.
OMAiSTDQDEY.
OrthoDBiEOG09360HRD.
PhylomeDBiQ9SAH7.

Family and domain databases

Gene3Di2.20.25.80. 1 hit.
InterProiView protein in InterPro
IPR003657. WRKY_dom.
PfamiView protein in Pfam
PF03106. WRKY. 1 hit.
SMARTiView protein in SMART
SM00774. WRKY. 1 hit.
SUPFAMiSSF118290. SSF118290. 1 hit.
PROSITEiView protein in PROSITE
PS50811. WRKY. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9SAH7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM
60 70 80 90 100
LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
110 120 130 140 150
GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ
160 170 180 190 200
WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
210 220 230 240 250
HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK
260 270 280 290 300
KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT

EK
Length:302
Mass (Da):33,696
Last modified:May 1, 2000 - v1
Checksum:iF8AFC891237CBA1D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF480149 mRNA. Translation: AAL85879.1.
AC011713 Genomic DNA. Translation: AAF14671.1.
CP002684 Genomic DNA. Translation: AEE36457.1.
BT001914 mRNA. Translation: AAN71913.1.
PIRiA96841.
RefSeqiNP_178199.1. NM_106732.4.
UniGeneiAt.28188.

Genome annotation databases

EnsemblPlantsiAT1G80840.1; AT1G80840.1; AT1G80840.
GeneIDi844423.
GrameneiAT1G80840.1; AT1G80840.1; AT1G80840.
KEGGiath:AT1G80840.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiWRK40_ARATH
AccessioniPrimary (citable) accession number: Q9SAH7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 15, 2002
Last sequence update: May 1, 2000
Last modified: June 7, 2017
This is version 110 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names