Q9SA52 (Y1934_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Uncharacterized protein At1g09340, chloroplastic

Alternative name(s):
Protein Gb5f

Gene names

Ordered Locus Names:	At1g09340
ORF Names:	T31J12.6

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	378 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level

General annotation (Comments)

Subcellular location	Plastid › chloroplast › plastoglobule Ref.7.
Sequence similarities	Belongs to the sugar epimerase family.

Ontologies

Keywords
Cellular component	Chloroplast Plastid
Domain	Transit peptide
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	chloroplast organization Inferred from mutant phenotype. Source: TAIR circadian rhythm Inferred from expression pattern. Source: TAIR defense response to bacterium Inferred from expression pattern. Source: TAIR rRNA processing Inferred from genetic interaction. Source: TAIR response to cold Inferred from expression pattern. Source: TAIR
Cellular component	apoplast Inferred from direct assay. Source: TAIR chloroplast envelope Inferred from direct assay. Source: TAIR membrane Inferred from direct assay. Source: TAIR peroxisome Inferred from direct assay. Source: TAIR plasmodesma Inferred from direct assay. Source: TAIR plastoglobule Inferred from direct assay Ref.7. Source: TAIR ribosome Inferred from direct assay. Source: TAIR stromule Inferred from direct assay. Source: TAIR vacuole Inferred from direct assay. Source: TAIR
Molecular function	catalytic activity Inferred from electronic annotation. Source: InterPro coenzyme binding Inferred from electronic annotation. Source: InterPro nucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Transit peptide	1 – ?		Chloroplast Potential
	Chain	? – 378		Uncharacterized protein At1g09340, chloroplastic		PRO_0000286529
Experimental info
	Sequence conflict	1 – 4	4	Missing in CAA75602. Ref.2
	Sequence conflict	170	1	S → F in CAA71589. Ref.1
	Sequence conflict	223	1	E → K in AAL32648. Ref.5

Sequences

	Sequence		Length	Mass (Da)
	Q9SA52 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: 9607E7B093F52518	FASTA	378	42,620
	10 20 30 40 50 60 MAKMMMLQQH QPSFSLLTSS LSDFNGAKLH LQVQYKRKVH QPKGALYVSA SSEKKILIMG 70 80 90 100 110 120 GTRFIGLFLS RILVKEGHQV TLFTRGKSPI AKQLPGESDQ DFADFSSKIL HLKGDRKDYD 130 140 150 160 170 180 FVKSSLSAEG FDVVYDINGR EAEEVEPILE ALPKLEQYIY CSSAGVYLKS DILPHCEEDA 190 200 210 220 230 240 VDPKSRHKGK LETESLLQSK GVNWTSIRPV YIYGPLNYNP VEEWFFHRLK AGRPIPVPNS 250 260 270 280 290 300 GIQISQLGHV KDLATAFLNV LGNEKASREI FNISGEKYVT FDGLAKACAK AGGFPEPEIV 310 320 330 340 350 360 HYNPKEFDFG KKKAFPFRDQ HFFASVEKAK HVLGWKPEFD LVEGLTDSYN LDFGRGTFRK 370 EADFTTDDMI LSKKLVLQ

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	Koncz C., Nuotio S., Eckstein L. Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[2]	Fulgosi H., Alcaraz J.-P., Herrmann R., Lerbs-Mache S. Submitted (NOV-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[3]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed: 11130712] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[4]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[5]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[6]	"Full-length cDNA from Arabidopsis thaliana." Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A. Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
[7]	"Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes." Ytterberg A.J., Peltier J.-B., van Wijk K.J. Plant Physiol. 140:984-997(2006) [PubMed: 16461379] [Abstract] Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. Strain: cv. Columbia.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	Y10557 mRNA. Translation: CAA71589.1. Y15382 mRNA. Translation: CAA75602.1. AC006416 Genomic DNA. Translation: AAD18098.1. CP002684 Genomic DNA. Translation: AEE28431.1. AY070022 mRNA. Translation: AAL47493.1. AF428282 mRNA. Translation: AAL16114.1. AY035050 mRNA. Translation: AAK59555.1. AF325043 mRNA. Translation: AAG40395.1. AY062570 mRNA. Translation: AAL32648.1. AY087609 mRNA. Translation: AAM65150.1.
IPI	IPI00548101.
PIR	E86226. T51863. T52072.
RefSeq	NP_172405.1. NM_100804.3.
UniGene	At.21708. At.50307.
3D structure databases
ProteinModelPortal	Q9SA52.
SMR	Q9SA52. Positions 54-127.
ModBase	Search...
Protein-protein interaction databases
STRING	Q9SA52.
Proteomic databases
PRIDE	Q9SA52.
ProMEX	Q9SA52.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT1G09340.1; AT1G09340.1; AT1G09340.
GeneID	837455.
GenomeReviews	Gene locus AT1G09340 in contig CT485782_GR.
KEGG	ath:AT1G09340.
NMPDR	fig|3702.1.peg.1156.
Organism-specific databases
TAIR	At1g09340.
Phylogenomic databases
eggNOG	COG0451.
GeneTree	EPGT00070000030564.
HOGENOM	HBG620021.
InParanoid	Q9SA52.
OMA	PTYIYGP.
PhylomeDB	Q9SA52.
ProtClustDB	PLN00016.
Gene expression databases
ArrayExpress	Q9SA52.
Genevestigator	Q9SA52.
Family and domain databases
InterPro	IPR001509. Epimerase_deHydtase. IPR016040. NAD(P)-bd_dom. [Graphical view]
Gene3D	G3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
Pfam	PF01370. Epimerase. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y1934_ARATH

Accession

Primary (citable) accession number: Q9SA52
Secondary accession number(s): O49260 , Q8LAU2, Q8W4G5, Q9T0N9

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 15, 2007
Last sequence update:	May 1, 2000
Last modified:	January 25, 2012
This is version 70 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program