Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

AT5g54270/MDK4_9

Gene

LHCB3*1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • chlorophyll binding Source: GO_Central
  • metal ion binding Source: UniProtKB-KW
  • pigment binding Source: GO_Central
  • structural molecule activity Source: TAIR

GO - Biological processi

  • photosynthesis Source: TAIR
  • photosynthesis, light harvesting in photosystem I Source: GO_Central
  • protein-chromophore linkage Source: UniProtKB-KW
  • response to light stimulus Source: GO_Central
Complete GO annotation...

Keywords - Biological processi

Photosynthesis

Keywords - Ligandi

ChlorophyllSAAS annotation, Chromophore, MagnesiumSAAS annotation, Metal-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
AT5g54270/MDK4_9Imported
Submitted name:
Lhcb3 chlorophyll a/b binding proteinImported
Submitted name:
Lhcb3 proteinImported
Submitted name:
Light-harvesting chlorophyll B-binding protein 3Imported
Submitted name:
Type III chlorophyll a/b binding proteinImported
Gene namesi
Name:LHCB3*1Imported
Synonyms:LHCB3Imported, Lhcb3Imported
Ordered Locus Names:At5g54270Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G54270.

Subcellular locationi

  • Plastidchloroplast thylakoid membrane SAAS annotation

GO - Cellular componenti

  • chloroplast Source: TAIR
  • chloroplast envelope Source: GO_Central
  • chloroplast thylakoid Source: TAIR
  • chloroplast thylakoid membrane Source: TAIR
  • integral component of membrane Source: UniProtKB-KW
  • photosystem I Source: UniProtKB-KW
  • plastoglobule Source: GO_Central
  • thylakoid Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

ChloroplastSAAS annotation, Membrane, Photosystem ISAAS annotation, Plastid, ThylakoidSAAS annotation

Interactioni

Subunit structurei

The LHC complex consists of chlorophyll a-b binding proteins.SAAS annotation

Protein-protein interaction databases

STRINGi3702.AT5G54270.1.

Structurei

3D structure databases

SMRiQ9S7M0. Positions 47-254.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.SAAS annotation

Keywords - Domaini

TransmembraneSAAS annotation

Phylogenomic databases

eggNOGiENOG410IKZW. Eukaryota.
ENOG410YAI6. LUCA.
HOGENOMiHOG000238032.
KOiK08914.
OMAiRITMGND.
PhylomeDBiQ9S7M0.

Family and domain databases

Gene3Di1.10.3460.10. 1 hit.
InterProiIPR001344. Chloro_AB-bd_pln.
IPR022796. Chloroa_b-bind.
IPR023329. Chlorophyll_a/b-bd_dom.
[Graphical view]
PANTHERiPTHR21649. PTHR21649. 1 hit.
PfamiPF00504. Chloroa_b-bind. 1 hit.
[Graphical view]
SUPFAMiSSF103511. SSF103511. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9S7M0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP
60 70 80 90 100
DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
110 120 130 140 150
RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL
160 170 180 190 200
VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
210 220 230 240 250
DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV
260
ANNAWAFATK FAPGA
Length:265
Mass (Da):28,707
Last modified:May 1, 2000 - v1
Checksum:i75593036C6AFBE25
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF134126 mRNA. Translation: AAD28773.1.
AF143691 mRNA. Translation: AAD37362.1.
AF361858 mRNA. Translation: AAK32870.1.
AF372917 mRNA. Translation: AAK49633.1.
AY057735 mRNA. Translation: AAL15365.1.
CP002688 Genomic DNA. Translation: AED96477.1.
AB010695 Genomic DNA. Translation: BAB10750.1.
PIRiT52318.
RefSeqiNP_200238.1. NM_124807.3.
UniGeneiAt.10812.
At.21173.
At.32199.
At.49175.
At.66422.
At.70236.

Genome annotation databases

EnsemblPlantsiAT5G54270.1; AT5G54270.1; AT5G54270.
GeneIDi835515.
GrameneiAT5G54270.1; AT5G54270.1; AT5G54270.
KEGGiath:AT5G54270.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF134126 mRNA. Translation: AAD28773.1.
AF143691 mRNA. Translation: AAD37362.1.
AF361858 mRNA. Translation: AAK32870.1.
AF372917 mRNA. Translation: AAK49633.1.
AY057735 mRNA. Translation: AAL15365.1.
CP002688 Genomic DNA. Translation: AED96477.1.
AB010695 Genomic DNA. Translation: BAB10750.1.
PIRiT52318.
RefSeqiNP_200238.1. NM_124807.3.
UniGeneiAt.10812.
At.21173.
At.32199.
At.49175.
At.66422.
At.70236.

3D structure databases

SMRiQ9S7M0. Positions 47-254.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G54270.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G54270.1; AT5G54270.1; AT5G54270.
GeneIDi835515.
GrameneiAT5G54270.1; AT5G54270.1; AT5G54270.
KEGGiath:AT5G54270.

Organism-specific databases

TAIRiAT5G54270.

Phylogenomic databases

eggNOGiENOG410IKZW. Eukaryota.
ENOG410YAI6. LUCA.
HOGENOMiHOG000238032.
KOiK08914.
OMAiRITMGND.
PhylomeDBiQ9S7M0.

Family and domain databases

Gene3Di1.10.3460.10. 1 hit.
InterProiIPR001344. Chloro_AB-bd_pln.
IPR022796. Chloroa_b-bind.
IPR023329. Chlorophyll_a/b-bd_dom.
[Graphical view]
PANTHERiPTHR21649. PTHR21649. 1 hit.
PfamiPF00504. Chloroa_b-bind. 1 hit.
[Graphical view]
SUPFAMiSSF103511. SSF103511. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones."
    Kaneko T., Kotani H., Nakamura Y., Sato S., Asamizu E., Miyajima N., Tabata S.
    DNA Res. 5:131-145(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "A guide to the Lhc genes and their relatives in Arabidopsis."
    Jansson S.
    Trends Plant Sci. 4:236-240(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  3. "Isolation of an Arabidopsis type III chlorophyll a/b binding protein gene (Lhcb3*1)."
    Benedetti C.E., Arruda P.
    Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
    Kazusa DNA Research Institute, Cold Spring Harbor and Washington University in St Louis Sequencing Consortium, European Union Arabidopsis Genome Sequencing Consortium
    Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.
    , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
    Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  5. Cited for: NUCLEOTIDE SEQUENCE.
  6. Cited for: NUCLEOTIDE SEQUENCE.
  7. Cited for: NUCLEOTIDE SEQUENCE.
  8. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  9. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiQ9S7M0_ARATH
AccessioniPrimary (citable) accession number: Q9S7M0
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: May 11, 2016
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.