Q9S7J7 (Q9S7J7_ARATH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
At2g05070/F1O13.20 EMBL AAL06878.1

Submitted name:
Lhcb2 protein EMBL AAD28770.1
Submitted name:
Photosystem II light harvesting complex protein 2.2 EMBL AEC05893.1
Submitted name:
Putative chlorophyll a/b binding protein EMBL AAD25595.1

Gene names

Name:	Lhcb2.2 EMBL AAD28770.1
Synonyms:	At2g05070/F1O13.20 EMBL AAL32641.1, LHCB2.2 EMBL AEC05893.1
Ordered Locus Names:	At2g05070 EMBL AAM13371.1 TAIR At2g05070
ORF Names:	AT2G05070 EMBL AEC05893.1

Organism

Arabidopsis thaliana (Mouse-ear cress) [Reference proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	265 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Cofactor

Binds at least 14 chlorophylls (8 Chl-a and 6 Chl-b) and carotenoids such as lutein and neoxanthin By similarity. SAAS SAAS023329

Ontologies

Keywords
Biological process	Photosynthesis SAAS SAAS023329
Cellular component	Chloroplast SAAS SAAS023329 Plastid
Ligand	Magnesium SAAS SAAS023329 Metal-binding SAAS SAAS023329
PTM	Phosphoprotein SAAS SAAS023329
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	photosynthesis, light harvesting Inferred from electronic annotation. Source: InterPro
Cellular_component	chloroplast envelope Inferred from direct assay PubMed 12766230. Source: TAIR chloroplast thylakoid membrane Inferred from direct assay PubMed 14729914PubMed 15322131. Source: TAIR plastoglobule Inferred from direct assay PubMed 16414959. Source: TAIR vacuolar membrane Inferred from direct assay PubMed 17151019. Source: TAIR
Molecular_function	metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9S7J7 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: 7F780F4E62B45547	FASTA	265	28,621
	10 20 30 40 50 60 MATSAIQQSS FAGQTALKPS SDLIQKVGVL GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP 70 80 90 100 110 120 FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI HSRWAMLGAL GCTFPEILSK 130 140 150 160 170 180 NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP 190 200 210 220 230 240 LGEGLDPLYP GGAFDPLNLA EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE 250 260 NLFDHLADPV ANNAWSYATN FVPGK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana." Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. , Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C. Nature 402:761-768(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	"A guide to the Lhc genes and their relatives in Arabidopsis." Jansson S. Trends Plant Sci. 4:236-240(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[3]	"Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence." Town C.D., Haas B.J., Wu D., Maiti R., Hannick L.I., Chan A.P., Tallon L.J., Rooney T., Utterback T.R., VanAken S.E., Feldblyum T.V., White O., Fraser C.M. Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[4]	Lin X. Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[5]	"Arabidopsis cDNA clones." Shinn P., Chen H., Cheuk R., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L., Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J. , Lam B., Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[6]	Southwick A., Karlin-Neumann G., Nguyen M., Lam B., Miranda M., Palm C.J., Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K., Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C. , Lin J., Liu S.X., Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P., Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W. Submitted (NOV-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[7]	"Arabidopsis ORF clones." Kim C.J., Chen H., Cheuk R., Meyers M.C., Banh J., Bowser L., Carninci P., Chang E., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M. , Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Wu H.C., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (DEC-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[8]	Town C.D., Kaul S. Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[9]	Southwick A., Karlin-Neumann G., Nguyen M., Lam B., Miranda M., Palm C.J., Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K., Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C. , Lin J., Liu S.X., Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P., Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W. Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[10]	TAIR Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[11]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC007211 Genomic DNA. Translation: AAD25595.1. AF134123 mRNA. Translation: AAD28770.1. AY054218 mRNA. Translation: AAL06878.1. AY062563 mRNA. Translation: AAL32641.1. AY066036 mRNA. Translation: AAL47403.1. AY093372 mRNA. Translation: AAM13371.1. CP002685 Genomic DNA. Translation: AEC05893.1.
IPI	IPI00542481.
PIR	T52324.
RefSeq	NP_178582.1. NM_126537.3.
UniGene	At.48420. At.63397. At.72525.
3D structure databases
SMR	Q9S7J7. Positions 47-265.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q9S7J7. 1 interaction.
STRING	3702.AT2G05070.1-P.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT2G05070.1; AT2G05070.1; AT2G05070.
GeneID	815055.
KEGG	ath:AT2G05070.
Organism-specific databases
TAIR	At2g05070.
Phylogenomic databases
eggNOG	NOG312402.
HOGENOM	HOG000238032.
InParanoid	Q9S7J7.
KO	K08913.
OMA	AFATKYT.
ProtClustDB	PLN00025.
Gene expression databases
Genevestigator	Q9S7J7.
Family and domain databases
Gene3D	1.10.3460.10. 1 hit.
InterPro	IPR001344. Chloro_AB-bd_pln. IPR022796. Chloroa_b-bind. IPR023329. Chlorophyll_a/b-bd_dom. [Graphical view]
PANTHER	PTHR21649. PTHR21649. 1 hit.
Pfam	PF00504. Chloroa_b-bind. 1 hit. [Graphical view]
SUPFAM	SSF103511. SSF103511. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q9S7J7_ARATH

Accession

Primary (citable) accession number: Q9S7J7

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	May 1, 2013
This is version 89 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)