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Protein

Putative pentatricopeptide repeat-containing protein At2g01510

Gene

PCMP-H36

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Putative pentatricopeptide repeat-containing protein At2g01510
Gene namesi
Name:PCMP-H36
Ordered Locus Names:At3g02010
ORF Names:F1C9.21, F28J7.34
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G02010
TAIRilocus:2078653 AT3G02010

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003560651 – 825Putative pentatricopeptide repeat-containing protein At2g01510Add BLAST825

Proteomic databases

PaxDbiQ9S7F4

Expressioni

Gene expression databases

ExpressionAtlasiQ9S7F4 baseline and differential
GenevisibleiQ9S7F4 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G02010.1

Structurei

3D structure databases

ProteinModelPortaliQ9S7F4
SMRiQ9S7F4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati47 – 77PPR 1Add BLAST31
Repeati78 – 108PPR 2Add BLAST31
Repeati109 – 143PPR 3Add BLAST35
Repeati146 – 180PPR 4Add BLAST35
Repeati183 – 213PPR 5Add BLAST31
Repeati214 – 248PPR 6Add BLAST35
Repeati249 – 283PPR 7Add BLAST35
Repeati284 – 314PPR 8Add BLAST31
Repeati315 – 349PPR 9Add BLAST35
Repeati350 – 384PPR 10Add BLAST35
Repeati385 – 415PPR 11Add BLAST31
Repeati416 – 450PPR 12Add BLAST35
Repeati451 – 485PPR 13Add BLAST35
Repeati486 – 516PPR 14Add BLAST31
Repeati517 – 551PPR 15Add BLAST35
Repeati552 – 587PPR 16Add BLAST36
Repeati588 – 618PPR 17Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni623 – 699Type E motifAdd BLAST77
Regioni700 – 730Type E(+) motifAdd BLAST31
Regioni731 – 825Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9S7F4
OMAiNFPFATM
OrthoDBiEOG09360353
PhylomeDBiQ9S7F4

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 6 hits
PF13041 PPR_2, 4 hits
TIGRFAMsiTIGR00756 PPR, 7 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 14 hits

Sequencei

Sequence statusi: Complete.

Q9S7F4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLYCNSNEV RSRTLATLRQ LRQPSPATFL DTRRVDARII KTGFDTDTCR
60 70 80 90 100
SNFIVEDLLR RGQVSAARKV YDEMPHKNTV STNTMISGHV KTGDVSSARD
110 120 130 140 150
LFDAMPDRTV VTWTILMGWY ARNSHFDEAF KLFRQMCRSS SCTLPDHVTF
160 170 180 190 200
TTLLPGCNDA VPQNAVGQVH AFAVKLGFDT NPFLTVSNVL LKSYCEVRRL
210 220 230 240 250
DLACVLFEEI PEKDSVTFNT LITGYEKDGL YTESIHLFLK MRQSGHQPSD
260 270 280 290 300
FTFSGVLKAV VGLHDFALGQ QLHALSVTTG FSRDASVGNQ ILDFYSKHDR
310 320 330 340 350
VLETRMLFDE MPELDFVSYN VVISSYSQAD QYEASLHFFR EMQCMGFDRR
360 370 380 390 400
NFPFATMLSI AANLSSLQMG RQLHCQALLA TADSILHVGN SLVDMYAKCE
410 420 430 440 450
MFEEAELIFK SLPQRTTVSW TALISGYVQK GLHGAGLKLF TKMRGSNLRA
460 470 480 490 500
DQSTFATVLK ASASFASLLL GKQLHAFIIR SGNLENVFSG SGLVDMYAKC
510 520 530 540 550
GSIKDAVQVF EEMPDRNAVS WNALISAHAD NGDGEAAIGA FAKMIESGLQ
560 570 580 590 600
PDSVSILGVL TACSHCGFVE QGTEYFQAMS PIYGITPKKK HYACMLDLLG
610 620 630 640 650
RNGRFAEAEK LMDEMPFEPD EIMWSSVLNA CRIHKNQSLA ERAAEKLFSM
660 670 680 690 700
EKLRDAAAYV SMSNIYAAAG EWEKVRDVKK AMRERGIKKV PAYSWVEVNH
710 720 730 740 750
KIHVFSSNDQ THPNGDEIVR KINELTAEIE REGYKPDTSS VVQDVDEQMK
760 770 780 790 800
IESLKYHSER LAVAFALIST PEGCPIVVMK NLRACRDCHA AIKLISKIVK
810 820
REITVRDTSR FHHFSEGVCS CGDYW
Length:825
Mass (Da):92,376
Last modified:May 1, 2000 - v1
Checksum:i9A23BECA9674682B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC010797 Genomic DNA Translation: AAF03451.1
AC011664 Genomic DNA Translation: AAF14834.1
CP002686 Genomic DNA Translation: AEE73749.1
RefSeqiNP_186850.1, NM_111067.2

Genome annotation databases

EnsemblPlantsiAT3G02010.1; AT3G02010.1; AT3G02010
GeneIDi821085
GrameneiAT3G02010.1; AT3G02010.1; AT3G02010
KEGGiath:AT3G02010

Similar proteinsi

Entry informationi

Entry nameiPP206_ARATH
AccessioniPrimary (citable) accession number: Q9S7F4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health