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Unreviewed, UniProtKB/TrEMBL Q9S310 (Q9S310_RUMFL)

Last modified June 16, 2009. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information

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Names and origin

Protein namesSubmitted name:
    Family 11 Xylanase /Family 16 Beta (1,3-1,4) Glucanase EMBL CAB51934.1
Gene names
Name: xynD EMBL CAB51934.1
OrganismRuminococcus flavefaciens EMBL CAB51934.1
Taxonomic identifier1265 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Ruminococcaceae › Ruminococcus

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Protein attributes

Sequence length802 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

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General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 11 (cellulase G) family. RuleBase RU003433V0

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Ontologies

Keywords
   Biological processXylan degradation RuleBase RU003433V0
   Molecular functionGlycosidase RuleBase RU003433V0
Hydrolase
Gene Ontology (GO)
   Biological processxylan catabolic process

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionhydrolase activity, hydrolyzing O-glycosyl compounds

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain2 – 802801Family 11 Xylanase /Family 16 Beta (1,3-1,4) Glucanase EMBL CAB51934.1
PRO_5000064798

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Sequences

Sequence LengthMass (Da)Tools
Q9S310-1 [UniParc].

Last modified December 1, 2001. Version 2.
Checksum: F36BC68805FC5274

FASTA80289,019
        10         20         30         40         50         60 
MKKSIFKRYA AAVGLMASVL MFTAVPTTSN AADDQKTGKV GGFDWEMWNQ NYTGTVSMNP 

        70         80         90        100        110        120 
GAGSFTCSWS GIENFLARMG KNYDDQKKNY KAFGDIVLTY DVEYTPRGNS YMCIYGWTRN 

       130        140        150        160        170        180 
PLMEYYIVEG WGDWEPPGND GVDNFGTTTI DGKTYKIRKS MRYNQPSIEG TKTFPQYWSV 

       190        200        210        220        230        240 
RTTSGSRNNT TNYMKDQVSV TKHFDAWSKA GLDMSGTLYE VSLNIEGYRS NGSANVKSIS 

       250        260        270        280        290        300 
FDGGIDIPDP EPIKPDENGY YLKENFESGE GNWSGRGSAK VKSSSGYDGT KGIFVSGRED 

       310        320        330        340        350        360 
TWNGASINLD ELTFKAGETY SLGTAVMQDF ESSVDFKLTL QYTDADGKEN YDEVKTVTAA 

       370        380        390        400        410        420 
KGQWVDLSNS SYTIPSGATG LVLYVEVPES KTDFYMDGAY AGVKGTKPLI SISSQSVDPP 

       430        440        450        460        470        480 
VTEPTNPTNP TGPSVTKWGD ANCDGGVDLS DAIFIMQFLA NPNKYGLTGT ETNHMTNQGK 

       490        500        510        520        530        540 
VNGDVCEHGS GLTGDDAVSI QKYLIRAISE LPESYLEGHD PSKTTTTTTR ITTTTTTTTT 

       550        560        570        580        590        600 
TTTSKTTTTT TTTSPAMHGG YRDLGTPMNT SATMISDFRT GKAGDFFASD GWTNGKPFDC 

       610        620        630        640        650        660 
WWYKRNAVIN DGCLQLSIDQ KWTNDKNPDW DPRYSGGEFR TNNFYHYGYY ECSMQAMKND 

       670        680        690        700        710        720 
GVVSSFFTYT GPSDDNPWDE IDIEILGKNT TQVQFNYYTN GQGKHEKLYD LGFDSSEAYH 

       730        740        750        760        770        780 
TYGFDWQPNY IAWYVDGREV YRATQDIPKT PGKIMMNAWP GLTVDDWLKA FNGRTPLTAH 

       790        800 
YQWVTYNKNG VQHSSQGQNP WG

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References

[1]"Organisation and strain distribution of genes responsible for the utilization of xylans by the rumen cellulolytic bacterium Ruminococcus flavefaciens 17."
Aurilia V., Martin J.C., Munro C.A., Mercer D.K., Flint H.J.
Submitted (FEB-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 17 EMBL CAB51934.1.

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Cross-references

Sequence databases

AJ132472 Genomic DNA. Translation: CAB51934.1.
PIRA36910.

3D structure databases

HSSPHSSP built from PDB template 1AJK based on UniProtKB P23904.
ModBaseSearch...

Protein family/group databases

CAZyCBM22. Carbohydrate-Binding Module Family 22.
GH11. Glycoside Hydrolase Family 11.
GH16. Glycoside Hydrolase Family 16.

Family and domain databases

InterProIPR008264. Beta_glucanase.
IPR003305. CenC_carb_bd.
IPR013320. ConA-like_subgrp.
IPR001137. Glyco_hydro_11.
IPR013319. Glyco_hydro_11/12_cat.
IPR018208. Glyco_hydro_11_AS.
IPR000757. Glyco_hydro_16.
IPR008263. Glycoside_hydrolase_16_AS.
[Graphical view]
Gene3DG3DSA:2.60.120.200. ConA_like_subgrp. 1 hit.
G3DSA:2.60.120.180. Glyco_hydro_11/12_cat. 1 hit.
PfamPF02018. CBM_4_9. 1 hit.
PF00457. Glyco_hydro_11. 1 hit.
PF00722. Glyco_hydro_16. 1 hit.
[Graphical view]
PRINTSPR00737. GLHYDRLASE16.
PROSITEPS00776. GLYCOSYL_HYDROL_F11_1. 1 hit.
PS00777. GLYCOSYL_HYDROL_F11_2. 1 hit.
PS01034. GLYCOSYL_HYDROL_F16. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameQ9S310_RUMFL
AccessionPrimary (citable) accession number: Q9S310
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: December 1, 2001
Last modified: June 16, 2009
This is version 44 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information