Q9RYD0 (Q9RYD0_DEIRA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ribonuclease II family protein EMBL AAF09610.1

Gene names

Ordered Locus Names:

DR_0020

Organism

Deinococcus radiodurans

Taxonomic identifier

1299 [NCBI]

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus

Protein attributes

Sequence length	461 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 2R7D PDB 2R7F Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	RNA binding Inferred from electronic annotation. Source: InterPro ribonuclease activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9RYD0 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: 0120D1741B522ED3	FASTA	461	50,600
	10 20 30 40 50 60 MTQPELTPAQ RTEVELLARG RADKSRVLRD LKLPETPEAA HALLLRLGVW DEARTPYADR 70 80 90 100 110 120 LRAALNAVEL PVPDFDPAEE RLDLTHLPTF AIDDEGNQDP DDAVGVEDLG GGLTRLWVHV 130 140 150 160 170 180 ADVAALVAPD SPLDLEARAR GATLYLPDRT IGMLPDELVA KAGLGLHEVS PALSICLDLD 190 200 210 220 230 240 PDGNAEAVDV LLTRVKVQRL AYQEAQARLE AGEEPFVTLA RLARASRRLR EGEGALSIDL 250 260 270 280 290 300 PEVRVKADET GASVFPLPKP EMRTVVQECM TLAGWGTAIF ADDNEIPLPF ATQDYPTREV 310 320 330 340 350 360 AGDTLPAMWA RRKTLARTRF QPSPGPHHGM GLDLYAQATS PMRRYLDLVV HQQLRAFLAG 370 380 390 400 410 420 RDPLSSKVMA AHIAESQMNA DATRQAERLS RRHHTLRFIA AQPERVWDAV VVDRRGAQAT 430 440 450 460 LLIPDLAFDV QVNTPAAPGT ALQVQFADID LPQMRVRARS V

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1." White O., Eisen J.A., Heidelberg J.F., Hickey E.K., Peterson J.D., Dodson R.J., Haft D.H., Gwinn M.L., Nelson W.C., Richardson D.L., Moffat K.S., Qin H., Jiang L., Pamphile W., Crosby M., Shen M., Vamathevan J.J., Lam P. , McDonald L.A., Utterback T.R., Zalewski C., Makarova K.S., Aravind L., Daly M.J., Minton K.W., Fleischmann R.D., Ketchum K.A., Nelson K.E., Salzberg S.L., Smith H.O., Venter J.C., Fraser C.M. Science 286:1571-1577(1999) [PubMed: 10567266] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422.
[2]	"Crystal structure of ribonuclease II family protein from Deinococcus radiodurans." Seetharaman J., Neely H., Forouhar F., Wang D., Fang Y., Cunningham K., Ma L-C., Xia R., Liu J., Baran M.C., Acton T.B., Rost B., Montelione G.T., Hunt J.F., Tong L. Submitted (SEP-2007) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE000513 Genomic DNA. Translation: AAF09610.1.

PIR

C75571.

RefSeq

NP_293746.1. NC_001263.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2R7D	X-ray	1.80	A/B/C	1-461	[»]
2R7F	X-ray	2.70	A	1-461	[»]

ProteinModelPortal

Q9RYD0.

SMR

Q9RYD0. Positions 3-461.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

1797537.

GenomeReviews

Gene locus DR_0020 in contig AE000513_GR.

KEGG

dra:DR_0020.

NMPDR

fig|243230.1.peg.205.

PATRIC

21627509. VBIDeiRad64572_0186.

TIGR

DR_0020.

Phylogenomic databases

HOGENOM

HBG732115.

OMA

EARTPYA.

ProtClustDB

CLSK444317.

Family and domain databases

InterPro

IPR012340. NA-bd_OB-fold.
IPR001900. RNase_II/R.
IPR011991. WHTH_trsnscrt_rep_DNA-bd.
[Graphical view]

Gene3D

G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.

KO

K01147.

Pfam

PF00773. RNB. 1 hit.
[Graphical view]

SMART

SM00955. RNB. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q9RYD0_DEIRA

Accession

Primary (citable) accession number: Q9RYD0

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	December 14, 2011
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)