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Protein
Submitted name:

Ribonuclease II family protein

Gene

DR_0020

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciDRAD243230:GH46-20-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ribonuclease II family proteinImported
Gene namesi
Ordered Locus Names:DR_0020Imported
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)Imported
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi243230.DR_0020.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2R7DX-ray1.80A/B/C1-461[»]
2R7FX-ray2.70A1-461[»]
ProteinModelPortaliQ9RYD0.
SMRiQ9RYD0. Positions 3-461.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RYD0.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105C40. Bacteria.
COG0557. LUCA.
HOGENOMiHOG000061391.
InParanoidiQ9RYD0.
KOiK01147.
OMAiFATQDYP.
OrthoDBiEOG6Q5NRD.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.

Sequencei

Sequence statusi: Complete.

Q9RYD0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTQPELTPAQ RTEVELLARG RADKSRVLRD LKLPETPEAA HALLLRLGVW
60 70 80 90 100
DEARTPYADR LRAALNAVEL PVPDFDPAEE RLDLTHLPTF AIDDEGNQDP
110 120 130 140 150
DDAVGVEDLG GGLTRLWVHV ADVAALVAPD SPLDLEARAR GATLYLPDRT
160 170 180 190 200
IGMLPDELVA KAGLGLHEVS PALSICLDLD PDGNAEAVDV LLTRVKVQRL
210 220 230 240 250
AYQEAQARLE AGEEPFVTLA RLARASRRLR EGEGALSIDL PEVRVKADET
260 270 280 290 300
GASVFPLPKP EMRTVVQECM TLAGWGTAIF ADDNEIPLPF ATQDYPTREV
310 320 330 340 350
AGDTLPAMWA RRKTLARTRF QPSPGPHHGM GLDLYAQATS PMRRYLDLVV
360 370 380 390 400
HQQLRAFLAG RDPLSSKVMA AHIAESQMNA DATRQAERLS RRHHTLRFIA
410 420 430 440 450
AQPERVWDAV VVDRRGAQAT LLIPDLAFDV QVNTPAAPGT ALQVQFADID
460
LPQMRVRARS V
Length:461
Mass (Da):50,600
Last modified:May 1, 2000 - v1
Checksum:i0120D1741B522ED3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF09610.1.
PIRiC75571.
RefSeqiNP_293746.1. NC_001263.1.
WP_010886668.1. NC_001263.1.

Genome annotation databases

EnsemblBacteriaiAAF09610; AAF09610; DR_0020.
GeneIDi1797537.
KEGGidra:DR_0020.
PATRICi21627509. VBIDeiRad64572_0186.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF09610.1.
PIRiC75571.
RefSeqiNP_293746.1. NC_001263.1.
WP_010886668.1. NC_001263.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2R7DX-ray1.80A/B/C1-461[»]
2R7FX-ray2.70A1-461[»]
ProteinModelPortaliQ9RYD0.
SMRiQ9RYD0. Positions 3-461.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_0020.

Protocols and materials databases

DNASUi1797537.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF09610; AAF09610; DR_0020.
GeneIDi1797537.
KEGGidra:DR_0020.
PATRICi21627509. VBIDeiRad64572_0186.

Phylogenomic databases

eggNOGiENOG4105C40. Bacteria.
COG0557. LUCA.
HOGENOMiHOG000061391.
InParanoidiQ9RYD0.
KOiK01147.
OMAiFATQDYP.
OrthoDBiEOG6Q5NRD.

Enzyme and pathway databases

BioCyciDRAD243230:GH46-20-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ9RYD0.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422Imported.
  2. "The structure and enzymatic properties of a novel RNase II family enzyme from Deinococcus radiodurans."
    Schmier B.J., Seetharaman J., Deutscher M.P., Hunt J.F., Malhotra A.
    J. Mol. Biol. 415:547-559(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS).

Entry informationi

Entry nameiQ9RYD0_DEIRA
AccessioniPrimary (citable) accession number: Q9RYD0
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: July 6, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.