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Protein

50S ribosomal protein L27

Gene

rpmA

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds the 5S and 23S rRNAs and also the tRNA in the P site.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L27
Gene namesi
Name:rpmA
Ordered Locus Names:DR_0085
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001810821 – 9150S ribosomal protein L27Add BLAST91

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L18.6 Publications

Protein-protein interaction databases

STRINGi243230.DR_0085.

Structurei

Secondary structure

191
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi22 – 25Combined sources4
Beta strandi27 – 29Combined sources3
Beta strandi36 – 39Combined sources4
Beta strandi41 – 47Combined sources7
Beta strandi51 – 53Combined sources3
Beta strandi59 – 63Combined sources5
Beta strandi66 – 71Combined sources6
Beta strandi73 – 75Combined sources3
Beta strandi77 – 82Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10U1-91[»]
1NWXX-ray3.50U1-91[»]
1NWYX-ray3.30U1-91[»]
1SM1X-ray3.42U1-91[»]
1XBPX-ray3.50U1-91[»]
1Y69X-ray3.33U1-91[»]
2ZJPX-ray3.70T1-91[»]
2ZJQX-ray3.30T1-91[»]
2ZJRX-ray2.91T1-91[»]
3CF5X-ray3.30T1-91[»]
3DLLX-ray3.50T1-91[»]
3PIOX-ray3.25T1-91[»]
3PIPX-ray3.45T1-91[»]
4IO9X-ray3.20T1-91[»]
4IOAX-ray3.20T1-91[»]
4IOCX-ray3.60T1-91[»]
4U67X-ray3.65T1-91[»]
4V49X-ray8.70U2-87[»]
4V4AX-ray9.50U2-87[»]
4V4GX-ray11.50X2-87[»]
4V4TX-ray6.4601-91[»]
4WFNX-ray3.54T1-91[»]
5DM6X-ray2.90T2-85[»]
5DM7X-ray3.00T2-85[»]
ProteinModelPortaliQ9RY65.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RY65.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L27P family.Curated

Phylogenomic databases

eggNOGiENOG4105K46. Bacteria.
COG0211. LUCA.
HOGENOMiHOG000111610.
InParanoidiQ9RY65.
KOiK02899.
OMAiNGRNNKK.
OrthoDBiPOG091H01MP.

Family and domain databases

HAMAPiMF_00539. Ribosomal_L27. 1 hit.
InterProiIPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
[Graphical view]
PANTHERiPTHR15893. PTHR15893. 1 hit.
PfamiPF01016. Ribosomal_L27. 1 hit.
[Graphical view]
PRINTSiPR00063. RIBOSOMALL27.
ProDomiPD003114. Ribosomal_L27. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00062. L27. 1 hit.
PROSITEiPS00831. RIBOSOMAL_L27. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9RY65-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHKKGVGSS KNGRDSNPKY LGVKKFGGEV VKAGNILVRQ RGTKFKAGQG
60 70 80 90
VGMGRDHTLF ALSDGKVVFI NKGKGARFIS IEAAQTEVAA D
Length:91
Mass (Da):9,590
Last modified:May 1, 2000 - v1
Checksum:iBF3CDBA77E9DC47C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF09678.1.
PIRiE75560.
RefSeqiNP_293811.1. NC_001263.1.
WP_010886733.1. NZ_CP015081.1.

Genome annotation databases

EnsemblBacteriaiAAF09678; AAF09678; DR_0085.
GeneIDi1799586.
KEGGidra:DR_0085.
PATRICi21627647. VBIDeiRad64572_0249.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF09678.1.
PIRiE75560.
RefSeqiNP_293811.1. NC_001263.1.
WP_010886733.1. NZ_CP015081.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10U1-91[»]
1NWXX-ray3.50U1-91[»]
1NWYX-ray3.30U1-91[»]
1SM1X-ray3.42U1-91[»]
1XBPX-ray3.50U1-91[»]
1Y69X-ray3.33U1-91[»]
2ZJPX-ray3.70T1-91[»]
2ZJQX-ray3.30T1-91[»]
2ZJRX-ray2.91T1-91[»]
3CF5X-ray3.30T1-91[»]
3DLLX-ray3.50T1-91[»]
3PIOX-ray3.25T1-91[»]
3PIPX-ray3.45T1-91[»]
4IO9X-ray3.20T1-91[»]
4IOAX-ray3.20T1-91[»]
4IOCX-ray3.60T1-91[»]
4U67X-ray3.65T1-91[»]
4V49X-ray8.70U2-87[»]
4V4AX-ray9.50U2-87[»]
4V4GX-ray11.50X2-87[»]
4V4TX-ray6.4601-91[»]
4WFNX-ray3.54T1-91[»]
5DM6X-ray2.90T2-85[»]
5DM7X-ray3.00T2-85[»]
ProteinModelPortaliQ9RY65.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_0085.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF09678; AAF09678; DR_0085.
GeneIDi1799586.
KEGGidra:DR_0085.
PATRICi21627647. VBIDeiRad64572_0249.

Phylogenomic databases

eggNOGiENOG4105K46. Bacteria.
COG0211. LUCA.
HOGENOMiHOG000111610.
InParanoidiQ9RY65.
KOiK02899.
OMAiNGRNNKK.
OrthoDBiPOG091H01MP.

Miscellaneous databases

EvolutionaryTraceiQ9RY65.

Family and domain databases

HAMAPiMF_00539. Ribosomal_L27. 1 hit.
InterProiIPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
[Graphical view]
PANTHERiPTHR15893. PTHR15893. 1 hit.
PfamiPF01016. Ribosomal_L27. 1 hit.
[Graphical view]
PRINTSiPR00063. RIBOSOMALL27.
ProDomiPD003114. Ribosomal_L27. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00062. L27. 1 hit.
PROSITEiPS00831. RIBOSOMAL_L27. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL27_DEIRA
AccessioniPrimary (citable) accession number: Q9RY65
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 5, 2002
Last sequence update: May 1, 2000
Last modified: November 2, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.