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Protein

50S ribosomal protein L27

Gene

rpmA

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Binds the 5S and 23S rRNAs and also the tRNA in the P site.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding, tRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L27
Gene namesi
Name:rpmA
Ordered Locus Names:DR_0085
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001810821 – 9150S ribosomal protein L27Add BLAST91

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L18.6 Publications

Protein-protein interaction databases

STRINGi243230.DR_0085

Structurei

Secondary structure

191
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi22 – 25Combined sources4
Beta strandi27 – 29Combined sources3
Beta strandi36 – 39Combined sources4
Beta strandi41 – 47Combined sources7
Beta strandi51 – 53Combined sources3
Beta strandi59 – 63Combined sources5
Beta strandi66 – 71Combined sources6
Beta strandi73 – 75Combined sources3
Beta strandi77 – 82Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10U1-91[»]
1NWXX-ray3.50U1-91[»]
1NWYX-ray3.30U1-91[»]
1SM1X-ray3.42U1-91[»]
1XBPX-ray3.50U1-91[»]
1Y69X-ray3.33U1-91[»]
2ZJPX-ray3.70T1-91[»]
2ZJQX-ray3.30T1-91[»]
2ZJRX-ray2.91T1-91[»]
3CF5X-ray3.30T1-91[»]
3DLLX-ray3.50T1-91[»]
3PIOX-ray3.25T1-91[»]
3PIPX-ray3.45T1-91[»]
4IO9X-ray3.20T1-91[»]
4IOAX-ray3.20T1-91[»]
4IOCX-ray3.60T1-91[»]
4U67X-ray3.65T1-91[»]
4V49X-ray8.70U2-87[»]
4V4AX-ray9.50U2-87[»]
4V4GX-ray11.50X2-87[»]
4V4TX-ray6.4601-91[»]
4WFNX-ray3.54T1-91[»]
5DM6X-ray2.90T2-85[»]
5DM7X-ray3.00T2-85[»]
5JVGX-ray3.43T1-91[»]
5JVHX-ray3.58T1-91[»]
DisProtiDP00886
ProteinModelPortaliQ9RY65
SMRiQ9RY65
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RY65

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105K46 Bacteria
COG0211 LUCA
HOGENOMiHOG000111610
InParanoidiQ9RY65
KOiK02899
OMAiKDHTLHA
OrthoDBiPOG091H01MP

Family and domain databases

HAMAPiMF_00539 Ribosomal_L27, 1 hit
InterProiView protein in InterPro
IPR001684 Ribosomal_L27
IPR018261 Ribosomal_L27_CS
PANTHERiPTHR15893 PTHR15893, 1 hit
PfamiView protein in Pfam
PF01016 Ribosomal_L27, 1 hit
PRINTSiPR00063 RIBOSOMALL27
ProDomiView protein in ProDom or Entries sharing at least one domain
PD003114 Ribosomal_L27, 1 hit
TIGRFAMsiTIGR00062 L27, 1 hit
PROSITEiView protein in PROSITE
PS00831 RIBOSOMAL_L27, 1 hit

Sequencei

Sequence statusi: Complete.

Q9RY65-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHKKGVGSS KNGRDSNPKY LGVKKFGGEV VKAGNILVRQ RGTKFKAGQG
60 70 80 90
VGMGRDHTLF ALSDGKVVFI NKGKGARFIS IEAAQTEVAA D
Length:91
Mass (Da):9,590
Last modified:May 1, 2000 - v1
Checksum:iBF3CDBA77E9DC47C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA Translation: AAF09678.1
PIRiE75560
RefSeqiNP_293811.1, NC_001263.1
WP_010886733.1, NZ_CP015081.1

Genome annotation databases

EnsemblBacteriaiAAF09678; AAF09678; DR_0085
GeneIDi1799586
KEGGidra:DR_0085
PATRICifig|243230.17.peg.249

Similar proteinsi

Entry informationi

Entry nameiRL27_DEIRA
AccessioniPrimary (citable) accession number: Q9RY65
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 5, 2002
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome
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Main funding by: National Institutes of Health