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Protein

50S ribosomal protein L3

Gene

rplC

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L3
Gene namesi
Name:rplC
Ordered Locus Names:DR_0311
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000770971 – 21150S ribosomal protein L3Add BLAST211

Proteomic databases

PRIDEiQ9RXK2

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L19. Also contacts proteins L13 and L17.6 Publications

Protein-protein interaction databases

STRINGi243230.DR_0311

Structurei

Secondary structure

1211
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 16Combined sources14
Beta strandi19 – 27Combined sources9
Beta strandi35 – 37Combined sources3
Helixi39 – 42Combined sources4
Beta strandi46 – 50Combined sources5
Helixi56 – 58Combined sources3
Helixi61 – 69Combined sources9
Beta strandi78 – 83Combined sources6
Beta strandi87 – 90Combined sources4
Helixi92 – 95Combined sources4
Beta strandi101 – 107Combined sources7
Beta strandi112 – 114Combined sources3
Helixi116 – 120Combined sources5
Beta strandi127 – 130Combined sources4
Beta strandi135 – 137Combined sources3
Beta strandi144 – 147Combined sources4
Beta strandi157 – 161Combined sources5
Beta strandi164 – 176Combined sources13
Turni177 – 180Combined sources4
Beta strandi181 – 186Combined sources6
Beta strandi194 – 199Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10B1-211[»]
1NWXX-ray3.50B1-211[»]
1NWYX-ray3.30B1-211[»]
1SM1X-ray3.42B1-211[»]
1XBPX-ray3.50B1-211[»]
2OGMX-ray3.50B1-211[»]
2OGNX-ray3.56B1-211[»]
2OGOX-ray3.66B1-211[»]
2ZJPX-ray3.70B1-211[»]
2ZJQX-ray3.30B1-211[»]
2ZJRX-ray2.91B1-211[»]
3CF5X-ray3.30B1-211[»]
3DLLX-ray3.50B1-211[»]
3PIOX-ray3.25B1-211[»]
3PIPX-ray3.45B1-211[»]
4IO9X-ray3.20B1-211[»]
4IOAX-ray3.20B1-211[»]
4IOCX-ray3.60B1-211[»]
4U67X-ray3.65B1-211[»]
4V49X-ray8.70B1-205[»]
4V4AX-ray9.50B1-205[»]
4V4GX-ray11.50E1-205[»]
4WFNX-ray3.54B1-211[»]
5DM6X-ray2.90B1-205[»]
5DM7X-ray3.00B1-205[»]
5JVGX-ray3.43B1-211[»]
5JVHX-ray3.58B1-211[»]
ProteinModelPortaliQ9RXK2
SMRiQ9RXK2
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RXK2

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105EEE Bacteria
COG0087 LUCA
HOGENOMiHOG000100368
InParanoidiQ9RXK2
KOiK02906
OMAiKGMRMAG
OrthoDBiPOG091H009A

Family and domain databases

HAMAPiMF_01325_B Ribosomal_L3_B, 1 hit
InterProiView protein in InterPro
IPR000597 Ribosomal_L3
IPR019927 Ribosomal_L3_bac/org-type
IPR019926 Ribosomal_L3_CS
IPR009000 Transl_B-barrel_sf
PANTHERiPTHR11229 PTHR11229, 1 hit
PfamiView protein in Pfam
PF00297 Ribosomal_L3, 1 hit
SUPFAMiSSF50447 SSF50447, 1 hit
TIGRFAMsiTIGR03625 L3_bact, 1 hit
PROSITEiView protein in PROSITE
PS00474 RIBOSOMAL_L3, 1 hit

Sequencei

Sequence statusi: Complete.

Q9RXK2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKGILGTKIG MTQIWKNDRA IPVTVVLAGP CPIVQRKTAQ TDGYEAVQIG
60 70 80 90 100
YAPKAERKVN KPMQGHFAKA GVAPTRILRE FRGFAPDGDS VNVDIFAEGE
110 120 130 140 150
KIDATGTSKG KGTQGVMKRW NFAGGPASHG SKKWHRRPGS IGQRKTPGRV
160 170 180 190 200
YKGKRMAGHM GMERVTVQNL EVVEIRAGEN LILVKGAIPG ANGGLVVLRS
210
AAKASAAKGG K
Length:211
Mass (Da):22,437
Last modified:May 1, 2000 - v1
Checksum:i04D0EE53A6276CE4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA Translation: AAF09892.1
PIRiG75533
RefSeqiNP_294034.1, NC_001263.1
WP_010886956.1, NZ_CP015081.1

Genome annotation databases

EnsemblBacteriaiAAF09892; AAF09892; DR_0311
GeneIDi1799285
KEGGidra:DR_0311
PATRICifig|243230.17.peg.477

Similar proteinsi

Entry informationi

Entry nameiRL3_DEIRA
AccessioniPrimary (citable) accession number: Q9RXK2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 16, 2004
Last sequence update: May 1, 2000
Last modified: May 23, 2018
This is version 108 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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