Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

50S ribosomal protein L3

Gene

rplC

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciDRAD243230:GH46-321-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L3
Gene namesi
Name:rplC
Ordered Locus Names:DR_0311
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 21121150S ribosomal protein L3PRO_0000077097Add
BLAST

Proteomic databases

PRIDEiQ9RXK2.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L19. Also contacts proteins L13 and L17.6 Publications

Protein-protein interaction databases

STRINGi243230.DR_0311.

Structurei

Secondary structure

1
211
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 1614Combined sources
Beta strandi19 – 279Combined sources
Beta strandi35 – 373Combined sources
Helixi39 – 424Combined sources
Beta strandi46 – 505Combined sources
Helixi56 – 583Combined sources
Helixi61 – 699Combined sources
Beta strandi78 – 836Combined sources
Beta strandi87 – 904Combined sources
Helixi92 – 954Combined sources
Beta strandi101 – 1077Combined sources
Beta strandi112 – 1143Combined sources
Helixi116 – 1205Combined sources
Beta strandi127 – 1304Combined sources
Beta strandi135 – 1373Combined sources
Beta strandi144 – 1474Combined sources
Beta strandi157 – 1615Combined sources
Beta strandi164 – 17613Combined sources
Turni177 – 1804Combined sources
Beta strandi181 – 1866Combined sources
Beta strandi194 – 1996Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10B1-211[»]
1NWXX-ray3.50B1-211[»]
1NWYX-ray3.30B1-211[»]
1SM1X-ray3.42B1-211[»]
1XBPX-ray3.50B1-211[»]
2OGMX-ray3.50B1-211[»]
2OGNX-ray3.56B1-211[»]
2OGOX-ray3.66B1-211[»]
2ZJPX-ray3.70B1-211[»]
2ZJQX-ray3.30B1-211[»]
2ZJRX-ray2.91B1-211[»]
3CF5X-ray3.30B1-211[»]
3DLLX-ray3.50B1-211[»]
3PIOX-ray3.25B1-211[»]
3PIPX-ray3.45B1-211[»]
4IO9X-ray3.20B1-211[»]
4IOAX-ray3.20B1-211[»]
4IOCX-ray3.60B1-211[»]
4U67X-ray3.65B1-211[»]
4V49X-ray8.70B1-205[»]
4V4AX-ray9.50B1-205[»]
4V4GX-ray11.50E1-205[»]
4WFNX-ray3.54B1-211[»]
5DM6X-ray2.90B1-205[»]
5DM7X-ray3.00B1-205[»]
ProteinModelPortaliQ9RXK2.
SMRiQ9RXK2. Positions 1-205.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RXK2.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L3P family.Curated

Phylogenomic databases

eggNOGiENOG4105EEE. Bacteria.
COG0087. LUCA.
HOGENOMiHOG000100368.
InParanoidiQ9RXK2.
KOiK02906.
OMAiKRMAGRY.
OrthoDBiPOG091H009A.

Family and domain databases

HAMAPiMF_01325_B. Ribosomal_L3_B. 1 hit.
InterProiIPR000597. Ribosomal_L3.
IPR019927. Ribosomal_L3_bac/org-type.
IPR019926. Ribosomal_L3_CS.
IPR009000. Transl_B-barrel.
[Graphical view]
PANTHERiPTHR11229. PTHR11229. 1 hit.
PfamiPF00297. Ribosomal_L3. 1 hit.
[Graphical view]
SUPFAMiSSF50447. SSF50447. 1 hit.
TIGRFAMsiTIGR03625. L3_bact. 1 hit.
PROSITEiPS00474. RIBOSOMAL_L3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9RXK2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKGILGTKIG MTQIWKNDRA IPVTVVLAGP CPIVQRKTAQ TDGYEAVQIG
60 70 80 90 100
YAPKAERKVN KPMQGHFAKA GVAPTRILRE FRGFAPDGDS VNVDIFAEGE
110 120 130 140 150
KIDATGTSKG KGTQGVMKRW NFAGGPASHG SKKWHRRPGS IGQRKTPGRV
160 170 180 190 200
YKGKRMAGHM GMERVTVQNL EVVEIRAGEN LILVKGAIPG ANGGLVVLRS
210
AAKASAAKGG K
Length:211
Mass (Da):22,437
Last modified:May 1, 2000 - v1
Checksum:i04D0EE53A6276CE4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF09892.1.
PIRiG75533.
RefSeqiNP_294034.1. NC_001263.1.
WP_010886956.1. NC_001263.1.

Genome annotation databases

EnsemblBacteriaiAAF09892; AAF09892; DR_0311.
GeneIDi1799285.
KEGGidra:DR_0311.
PATRICi21628120. VBIDeiRad64572_0477.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF09892.1.
PIRiG75533.
RefSeqiNP_294034.1. NC_001263.1.
WP_010886956.1. NC_001263.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10B1-211[»]
1NWXX-ray3.50B1-211[»]
1NWYX-ray3.30B1-211[»]
1SM1X-ray3.42B1-211[»]
1XBPX-ray3.50B1-211[»]
2OGMX-ray3.50B1-211[»]
2OGNX-ray3.56B1-211[»]
2OGOX-ray3.66B1-211[»]
2ZJPX-ray3.70B1-211[»]
2ZJQX-ray3.30B1-211[»]
2ZJRX-ray2.91B1-211[»]
3CF5X-ray3.30B1-211[»]
3DLLX-ray3.50B1-211[»]
3PIOX-ray3.25B1-211[»]
3PIPX-ray3.45B1-211[»]
4IO9X-ray3.20B1-211[»]
4IOAX-ray3.20B1-211[»]
4IOCX-ray3.60B1-211[»]
4U67X-ray3.65B1-211[»]
4V49X-ray8.70B1-205[»]
4V4AX-ray9.50B1-205[»]
4V4GX-ray11.50E1-205[»]
4WFNX-ray3.54B1-211[»]
5DM6X-ray2.90B1-205[»]
5DM7X-ray3.00B1-205[»]
ProteinModelPortaliQ9RXK2.
SMRiQ9RXK2. Positions 1-205.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_0311.

Proteomic databases

PRIDEiQ9RXK2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF09892; AAF09892; DR_0311.
GeneIDi1799285.
KEGGidra:DR_0311.
PATRICi21628120. VBIDeiRad64572_0477.

Phylogenomic databases

eggNOGiENOG4105EEE. Bacteria.
COG0087. LUCA.
HOGENOMiHOG000100368.
InParanoidiQ9RXK2.
KOiK02906.
OMAiKRMAGRY.
OrthoDBiPOG091H009A.

Enzyme and pathway databases

BioCyciDRAD243230:GH46-321-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ9RXK2.

Family and domain databases

HAMAPiMF_01325_B. Ribosomal_L3_B. 1 hit.
InterProiIPR000597. Ribosomal_L3.
IPR019927. Ribosomal_L3_bac/org-type.
IPR019926. Ribosomal_L3_CS.
IPR009000. Transl_B-barrel.
[Graphical view]
PANTHERiPTHR11229. PTHR11229. 1 hit.
PfamiPF00297. Ribosomal_L3. 1 hit.
[Graphical view]
SUPFAMiSSF50447. SSF50447. 1 hit.
TIGRFAMsiTIGR03625. L3_bact. 1 hit.
PROSITEiPS00474. RIBOSOMAL_L3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL3_DEIRA
AccessioniPrimary (citable) accession number: Q9RXK2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 16, 2004
Last sequence update: May 1, 2000
Last modified: September 7, 2016
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.