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Protein

50S ribosomal protein L3

Gene

rplC

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L3
Gene namesi
Name:rplC
Ordered Locus Names:DR_0311
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000770971 – 21150S ribosomal protein L3Add BLAST211

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L19. Also contacts proteins L13 and L17.6 Publications

Protein-protein interaction databases

STRINGi243230.DR_0311.

Structurei

Secondary structure

1211
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 16Combined sources14
Beta strandi19 – 27Combined sources9
Beta strandi35 – 37Combined sources3
Helixi39 – 42Combined sources4
Beta strandi46 – 50Combined sources5
Helixi56 – 58Combined sources3
Helixi61 – 69Combined sources9
Beta strandi78 – 83Combined sources6
Beta strandi87 – 90Combined sources4
Helixi92 – 95Combined sources4
Beta strandi101 – 107Combined sources7
Beta strandi112 – 114Combined sources3
Helixi116 – 120Combined sources5
Beta strandi127 – 130Combined sources4
Beta strandi135 – 137Combined sources3
Beta strandi144 – 147Combined sources4
Beta strandi157 – 161Combined sources5
Beta strandi164 – 176Combined sources13
Turni177 – 180Combined sources4
Beta strandi181 – 186Combined sources6
Beta strandi194 – 199Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10B1-211[»]
1NWXX-ray3.50B1-211[»]
1NWYX-ray3.30B1-211[»]
1SM1X-ray3.42B1-211[»]
1XBPX-ray3.50B1-211[»]
2OGMX-ray3.50B1-211[»]
2OGNX-ray3.56B1-211[»]
2OGOX-ray3.66B1-211[»]
2ZJPX-ray3.70B1-211[»]
2ZJQX-ray3.30B1-211[»]
2ZJRX-ray2.91B1-211[»]
3CF5X-ray3.30B1-211[»]
3DLLX-ray3.50B1-211[»]
3PIOX-ray3.25B1-211[»]
3PIPX-ray3.45B1-211[»]
4IO9X-ray3.20B1-211[»]
4IOAX-ray3.20B1-211[»]
4IOCX-ray3.60B1-211[»]
4U67X-ray3.65B1-211[»]
4V49X-ray8.70B1-205[»]
4V4AX-ray9.50B1-205[»]
4V4GX-ray11.50E1-205[»]
4WFNX-ray3.54B1-211[»]
5DM6X-ray2.90B1-205[»]
5DM7X-ray3.00B1-205[»]
ProteinModelPortaliQ9RXK2.
SMRiQ9RXK2.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RXK2.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L3P family.Curated

Phylogenomic databases

eggNOGiENOG4105EEE. Bacteria.
COG0087. LUCA.
HOGENOMiHOG000100368.
InParanoidiQ9RXK2.
KOiK02906.
OMAiKRMAGRY.
OrthoDBiPOG091H009A.

Family and domain databases

HAMAPiMF_01325_B. Ribosomal_L3_B. 1 hit.
InterProiIPR000597. Ribosomal_L3.
IPR019927. Ribosomal_L3_bac/org-type.
IPR019926. Ribosomal_L3_CS.
IPR009000. Transl_B-barrel.
[Graphical view]
PANTHERiPTHR11229. PTHR11229. 1 hit.
PfamiPF00297. Ribosomal_L3. 1 hit.
[Graphical view]
SUPFAMiSSF50447. SSF50447. 1 hit.
TIGRFAMsiTIGR03625. L3_bact. 1 hit.
PROSITEiPS00474. RIBOSOMAL_L3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9RXK2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKGILGTKIG MTQIWKNDRA IPVTVVLAGP CPIVQRKTAQ TDGYEAVQIG
60 70 80 90 100
YAPKAERKVN KPMQGHFAKA GVAPTRILRE FRGFAPDGDS VNVDIFAEGE
110 120 130 140 150
KIDATGTSKG KGTQGVMKRW NFAGGPASHG SKKWHRRPGS IGQRKTPGRV
160 170 180 190 200
YKGKRMAGHM GMERVTVQNL EVVEIRAGEN LILVKGAIPG ANGGLVVLRS
210
AAKASAAKGG K
Length:211
Mass (Da):22,437
Last modified:May 1, 2000 - v1
Checksum:i04D0EE53A6276CE4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF09892.1.
PIRiG75533.
RefSeqiNP_294034.1. NC_001263.1.
WP_010886956.1. NZ_CP015081.1.

Genome annotation databases

EnsemblBacteriaiAAF09892; AAF09892; DR_0311.
GeneIDi1799285.
KEGGidra:DR_0311.
PATRICi21628120. VBIDeiRad64572_0477.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF09892.1.
PIRiG75533.
RefSeqiNP_294034.1. NC_001263.1.
WP_010886956.1. NZ_CP015081.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10B1-211[»]
1NWXX-ray3.50B1-211[»]
1NWYX-ray3.30B1-211[»]
1SM1X-ray3.42B1-211[»]
1XBPX-ray3.50B1-211[»]
2OGMX-ray3.50B1-211[»]
2OGNX-ray3.56B1-211[»]
2OGOX-ray3.66B1-211[»]
2ZJPX-ray3.70B1-211[»]
2ZJQX-ray3.30B1-211[»]
2ZJRX-ray2.91B1-211[»]
3CF5X-ray3.30B1-211[»]
3DLLX-ray3.50B1-211[»]
3PIOX-ray3.25B1-211[»]
3PIPX-ray3.45B1-211[»]
4IO9X-ray3.20B1-211[»]
4IOAX-ray3.20B1-211[»]
4IOCX-ray3.60B1-211[»]
4U67X-ray3.65B1-211[»]
4V49X-ray8.70B1-205[»]
4V4AX-ray9.50B1-205[»]
4V4GX-ray11.50E1-205[»]
4WFNX-ray3.54B1-211[»]
5DM6X-ray2.90B1-205[»]
5DM7X-ray3.00B1-205[»]
ProteinModelPortaliQ9RXK2.
SMRiQ9RXK2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_0311.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF09892; AAF09892; DR_0311.
GeneIDi1799285.
KEGGidra:DR_0311.
PATRICi21628120. VBIDeiRad64572_0477.

Phylogenomic databases

eggNOGiENOG4105EEE. Bacteria.
COG0087. LUCA.
HOGENOMiHOG000100368.
InParanoidiQ9RXK2.
KOiK02906.
OMAiKRMAGRY.
OrthoDBiPOG091H009A.

Miscellaneous databases

EvolutionaryTraceiQ9RXK2.

Family and domain databases

HAMAPiMF_01325_B. Ribosomal_L3_B. 1 hit.
InterProiIPR000597. Ribosomal_L3.
IPR019927. Ribosomal_L3_bac/org-type.
IPR019926. Ribosomal_L3_CS.
IPR009000. Transl_B-barrel.
[Graphical view]
PANTHERiPTHR11229. PTHR11229. 1 hit.
PfamiPF00297. Ribosomal_L3. 1 hit.
[Graphical view]
SUPFAMiSSF50447. SSF50447. 1 hit.
TIGRFAMsiTIGR03625. L3_bact. 1 hit.
PROSITEiPS00474. RIBOSOMAL_L3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL3_DEIRA
AccessioniPrimary (citable) accession number: Q9RXK2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 16, 2004
Last sequence update: May 1, 2000
Last modified: November 2, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.