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Protein

50S ribosomal protein L16

Gene

rplP

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds the 5S and 23S rRNAs and is also seen to make contacts with the A and P site tRNAs. Interacts with A site tRNA mimics, and is probably one of the key factors, along with a helix of the 23S rRNA, in positioning tRNA stems in the peptidyl-transferase center.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L16
Gene namesi
Name:rplP
Ordered Locus Names:DR_0318
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved
ChainiPRO_00000620932 – 14150S ribosomal protein L16Add BLAST140

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts the CTC protein (RL25).6 Publications

Protein-protein interaction databases

STRINGi243230.DR_0318.

Structurei

Secondary structure

1141
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi29 – 36Combined sources8
Beta strandi40 – 43Combined sources4
Helixi44 – 58Combined sources15
Beta strandi63 – 66Combined sources4
Beta strandi72 – 74Combined sources3
Beta strandi78 – 80Combined sources3
Beta strandi84 – 86Combined sources3
Helixi89 – 91Combined sources3
Beta strandi92 – 95Combined sources4
Beta strandi102 – 109Combined sources8
Helixi111 – 123Combined sources13
Beta strandi125 – 127Combined sources3
Beta strandi129 – 132Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1GS2model-K6-135[»]
1NJMX-ray3.60K1-141[»]
1NJPX-ray3.50K1-141[»]
1NKWX-ray3.10K1-141[»]
1NWXX-ray3.50K1-141[»]
1NWYX-ray3.30K1-141[»]
1SM1X-ray3.42K1-141[»]
1XBPX-ray3.50K1-141[»]
1Y69X-ray3.33K1-141[»]
2ZJPX-ray3.70J1-141[»]
2ZJQX-ray3.30J1-141[»]
2ZJRX-ray2.91J1-141[»]
3CF5X-ray3.30J1-141[»]
3DLLX-ray3.50J1-141[»]
3PIOX-ray3.25J1-141[»]
3PIPX-ray3.45J1-141[»]
4IO9X-ray3.20J1-141[»]
4IOAX-ray3.20J1-141[»]
4IOCX-ray3.60J1-141[»]
4U67X-ray3.65J1-141[»]
4V49X-ray8.70K7-130[»]
4V4AX-ray9.50K7-130[»]
4V4GX-ray11.50N7-130[»]
4WFNX-ray3.54J1-141[»]
5DM6X-ray2.90J5-140[»]
5DM7X-ray3.00J5-140[»]
ProteinModelPortaliQ9RXJ5.
SMRiQ9RXJ5.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RXJ5.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L16P family.Curated

Phylogenomic databases

eggNOGiENOG4108R70. Bacteria.
COG0197. LUCA.
HOGENOMiHOG000164573.
InParanoidiQ9RXJ5.
KOiK02878.
OMAiKGAVEYW.
OrthoDBiPOG091H01B8.

Family and domain databases

CDDicd01433. Ribosomal_L16_L10e. 1 hit.
Gene3Di3.90.1170.10. 1 hit.
HAMAPiMF_01342. Ribosomal_L16. 1 hit.
InterProiIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
IPR020798. Ribosomal_L16_CS.
[Graphical view]
PANTHERiPTHR12220. PTHR12220. 1 hit.
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSiPR00060. RIBOSOMALL16.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR01164. rplP_bact. 1 hit.
PROSITEiPS00586. RIBOSOMAL_L16_1. 1 hit.
PS00701. RIBOSOMAL_L16_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9RXJ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLLPKRTKFR KQFRGRMTGD AKGGDYVAFG DYGLIAMEPA WIKSNQIEAC
60 70 80 90 100
RIVMSRHFRR GGKIYIRIFP DKPVTKKPAE TRMGKGKGAV EYWVSVVKPG
110 120 130 140
RVMFEVAGVT EEQAKEAFRL AGHKLPIQTK MVKREVYDEA Q
Length:141
Mass (Da):16,095
Last modified:January 23, 2007 - v3
Checksum:iF6666E00FF79FA5B
GO

Sequence cautioni

The sequence AAF09899 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF09899.1. Different initiation.
PIRiF75534.
RefSeqiNP_294041.1. NC_001263.1.
WP_010886963.1. NC_001263.1.
WP_025567820.1. NZ_CP015081.1.

Genome annotation databases

EnsemblBacteriaiAAF09899; AAF09899; DR_0318.
GeneIDi1798664.
KEGGidra:DR_0318.
PATRICi21628134. VBIDeiRad64572_0484.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF09899.1. Different initiation.
PIRiF75534.
RefSeqiNP_294041.1. NC_001263.1.
WP_010886963.1. NC_001263.1.
WP_025567820.1. NZ_CP015081.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1GS2model-K6-135[»]
1NJMX-ray3.60K1-141[»]
1NJPX-ray3.50K1-141[»]
1NKWX-ray3.10K1-141[»]
1NWXX-ray3.50K1-141[»]
1NWYX-ray3.30K1-141[»]
1SM1X-ray3.42K1-141[»]
1XBPX-ray3.50K1-141[»]
1Y69X-ray3.33K1-141[»]
2ZJPX-ray3.70J1-141[»]
2ZJQX-ray3.30J1-141[»]
2ZJRX-ray2.91J1-141[»]
3CF5X-ray3.30J1-141[»]
3DLLX-ray3.50J1-141[»]
3PIOX-ray3.25J1-141[»]
3PIPX-ray3.45J1-141[»]
4IO9X-ray3.20J1-141[»]
4IOAX-ray3.20J1-141[»]
4IOCX-ray3.60J1-141[»]
4U67X-ray3.65J1-141[»]
4V49X-ray8.70K7-130[»]
4V4AX-ray9.50K7-130[»]
4V4GX-ray11.50N7-130[»]
4WFNX-ray3.54J1-141[»]
5DM6X-ray2.90J5-140[»]
5DM7X-ray3.00J5-140[»]
ProteinModelPortaliQ9RXJ5.
SMRiQ9RXJ5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_0318.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF09899; AAF09899; DR_0318.
GeneIDi1798664.
KEGGidra:DR_0318.
PATRICi21628134. VBIDeiRad64572_0484.

Phylogenomic databases

eggNOGiENOG4108R70. Bacteria.
COG0197. LUCA.
HOGENOMiHOG000164573.
InParanoidiQ9RXJ5.
KOiK02878.
OMAiKGAVEYW.
OrthoDBiPOG091H01B8.

Miscellaneous databases

EvolutionaryTraceiQ9RXJ5.

Family and domain databases

CDDicd01433. Ribosomal_L16_L10e. 1 hit.
Gene3Di3.90.1170.10. 1 hit.
HAMAPiMF_01342. Ribosomal_L16. 1 hit.
InterProiIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
IPR020798. Ribosomal_L16_CS.
[Graphical view]
PANTHERiPTHR12220. PTHR12220. 1 hit.
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSiPR00060. RIBOSOMALL16.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR01164. rplP_bact. 1 hit.
PROSITEiPS00586. RIBOSOMAL_L16_1. 1 hit.
PS00701. RIBOSOMAL_L16_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL16_DEIRA
AccessioniPrimary (citable) accession number: Q9RXJ5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 15, 2004
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 110 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.