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Protein

50S ribosomal protein L24

Gene

rplX

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.By similarity
One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. Contacts trigger factor (TF) when it is bound to the ribosome; this contact may expose a hydrophobic crevice in TF (PubMed:16271892).1 Publication

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L24
Gene namesi
Name:rplX
Ordered Locus Names:DR_0322
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001306531 – 11550S ribosomal protein L24Add BLAST115

Proteomic databases

PRIDEiQ9RXJ1.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts trigger factor when it is bound to the ribosome (PubMed:16271892).7 Publications

Protein-protein interaction databases

STRINGi243230.DR_0322.

Structurei

Secondary structure

1115
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi6 – 10Combined sources5
Beta strandi21 – 23Combined sources3
Turni28 – 31Combined sources4
Beta strandi33 – 40Combined sources8
Turni41 – 44Combined sources4
Beta strandi45 – 48Combined sources4
Beta strandi53 – 56Combined sources4
Beta strandi62 – 64Combined sources3
Beta strandi69 – 72Combined sources4
Helixi78 – 80Combined sources3
Turni86 – 88Combined sources3
Beta strandi95 – 99Combined sources5
Turni100 – 102Combined sources3
Beta strandi103 – 107Combined sources5
Beta strandi108 – 110Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1GS2model-S2-115[»]
1NKWX-ray3.10S1-115[»]
1NWXX-ray3.50S1-115[»]
1NWYX-ray3.30S1-115[»]
1SM1X-ray3.42S1-115[»]
1XBPX-ray3.50S1-115[»]
2D3OX-ray3.35S1-115[»]
2ZJPX-ray3.70R1-115[»]
2ZJQX-ray3.30R1-115[»]
2ZJRX-ray2.91R1-115[»]
3CF5X-ray3.30R1-115[»]
3DLLX-ray3.50R1-115[»]
3PIOX-ray3.25R1-115[»]
3PIPX-ray3.45R1-115[»]
4IO9X-ray3.20R1-115[»]
4IOAX-ray3.20R1-115[»]
4IOCX-ray3.60R1-115[»]
4U67X-ray3.65R2-115[»]
4V49X-ray8.70S2-114[»]
4V4AX-ray9.50S2-114[»]
4V4GX-ray11.50V2-114[»]
4WFNX-ray3.54R1-115[»]
5DM6X-ray2.90R4-113[»]
5DM7X-ray3.00R4-113[»]
ProteinModelPortaliQ9RXJ1.
SMRiQ9RXJ1.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RXJ1.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L24P family.Curated

Phylogenomic databases

eggNOGiENOG4105KAR. Bacteria.
COG0198. LUCA.
HOGENOMiHOG000039891.
InParanoidiQ9RXJ1.
KOiK02895.
OMAiNVAIFNQ.
OrthoDBiPOG091H01PV.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
HAMAPiMF_01326_B. Ribosomal_L24_B. 1 hit.
InterProiIPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR003256. Ribosomal_L24.
IPR005825. Ribosomal_L24/26_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PfamiPF00467. KOW. 1 hit.
PF17136. ribosomal_L24. 1 hit.
[Graphical view]
SMARTiSM00739. KOW. 1 hit.
[Graphical view]
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01079. rplX_bact. 1 hit.
PROSITEiPS01108. RIBOSOMAL_L24. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9RXJ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRPSAGSHH NDKLHFKKGD TVIVLSGKHK GQTGKVLLAL PRDQKVVVEG
60 70 80 90 100
VNVITKNVKP SMTNPQGGQE QRELALHASK VALVDPETGK ATRVRKQIVD
110
GKKVRVAVAS GKTID
Length:115
Mass (Da):12,358
Last modified:May 1, 2000 - v1
Checksum:iFE0A0ABC51477BE1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF09903.1.
PIRiB75535.
RefSeqiNP_294045.1. NC_001263.1.
WP_010886967.1. NZ_CP015081.1.

Genome annotation databases

EnsemblBacteriaiAAF09903; AAF09903; DR_0322.
GeneIDi1798682.
KEGGidra:DR_0322.
PATRICi21628142. VBIDeiRad64572_0488.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF09903.1.
PIRiB75535.
RefSeqiNP_294045.1. NC_001263.1.
WP_010886967.1. NZ_CP015081.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1GS2model-S2-115[»]
1NKWX-ray3.10S1-115[»]
1NWXX-ray3.50S1-115[»]
1NWYX-ray3.30S1-115[»]
1SM1X-ray3.42S1-115[»]
1XBPX-ray3.50S1-115[»]
2D3OX-ray3.35S1-115[»]
2ZJPX-ray3.70R1-115[»]
2ZJQX-ray3.30R1-115[»]
2ZJRX-ray2.91R1-115[»]
3CF5X-ray3.30R1-115[»]
3DLLX-ray3.50R1-115[»]
3PIOX-ray3.25R1-115[»]
3PIPX-ray3.45R1-115[»]
4IO9X-ray3.20R1-115[»]
4IOAX-ray3.20R1-115[»]
4IOCX-ray3.60R1-115[»]
4U67X-ray3.65R2-115[»]
4V49X-ray8.70S2-114[»]
4V4AX-ray9.50S2-114[»]
4V4GX-ray11.50V2-114[»]
4WFNX-ray3.54R1-115[»]
5DM6X-ray2.90R4-113[»]
5DM7X-ray3.00R4-113[»]
ProteinModelPortaliQ9RXJ1.
SMRiQ9RXJ1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_0322.

Proteomic databases

PRIDEiQ9RXJ1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF09903; AAF09903; DR_0322.
GeneIDi1798682.
KEGGidra:DR_0322.
PATRICi21628142. VBIDeiRad64572_0488.

Phylogenomic databases

eggNOGiENOG4105KAR. Bacteria.
COG0198. LUCA.
HOGENOMiHOG000039891.
InParanoidiQ9RXJ1.
KOiK02895.
OMAiNVAIFNQ.
OrthoDBiPOG091H01PV.

Miscellaneous databases

EvolutionaryTraceiQ9RXJ1.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
HAMAPiMF_01326_B. Ribosomal_L24_B. 1 hit.
InterProiIPR005824. KOW.
IPR014722. Rib_L2_dom2.
IPR003256. Ribosomal_L24.
IPR005825. Ribosomal_L24/26_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PfamiPF00467. KOW. 1 hit.
PF17136. ribosomal_L24. 1 hit.
[Graphical view]
SMARTiSM00739. KOW. 1 hit.
[Graphical view]
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01079. rplX_bact. 1 hit.
PROSITEiPS01108. RIBOSOMAL_L24. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL24_DEIRA
AccessioniPrimary (citable) accession number: Q9RXJ1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 15, 2004
Last sequence update: May 1, 2000
Last modified: November 30, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.