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Protein
Submitted name:

Uncharacterized protein

Gene

DR_0467

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi332 – 3321Zinc 1; via tele nitrogenCombined sources
Metal bindingi334 – 3341Zinc 1; via tele nitrogenCombined sources
Metal bindingi339 – 3391Zinc 2Combined sources
Metal bindingi364 – 3641Zinc 2; via tele nitrogenCombined sources
Metal bindingi401 – 4011Zinc 1Combined sources
Metal bindingi401 – 4011Zinc 3Combined sources
Metal bindingi428 – 4281Zinc 3; via tele nitrogenCombined sources
Metal bindingi456 – 4561Zinc 3; via tele nitrogenCombined sources
Metal bindingi516 – 5161Zinc 1Combined sources
Metal bindingi518 – 5181Zinc 2; via tele nitrogenCombined sources

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-bindingCombined sources, ZincCombined sources

Enzyme and pathway databases

BioCyciDRAD243230:GH46-478-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:DR_0467Imported
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)Imported
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

PTM / Processingi

Proteomic databases

PRIDEiQ9RX48.

Interactioni

Protein-protein interaction databases

STRINGi243230.DR_0467.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2W9MX-ray2.46A/B1-572[»]
ProteinModelPortaliQ9RX48.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RX48.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini57 – 7620HhH1InterPro annotationAdd
BLAST
Domaini97 – 11620HhH1InterPro annotationAdd
BLAST
Domaini131 – 15020HhH1InterPro annotationAdd
BLAST
Domaini329 – 40678POLIIIAcInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4105DCG. Bacteria.
COG1387. LUCA.
COG1796. LUCA.
HOGENOMiHOG000292866.
InParanoidiQ9RX48.
KOiK02347.
OMAiHNHSTYS.
OrthoDBiEOG6QCD6J.

Family and domain databases

Gene3Di1.10.150.110. 1 hit.
3.30.210.10. 1 hit.
InterProiIPR002054. DNA-dir_DNA_pol_X.
IPR010996. DNA_pol_b-like_N.
IPR027421. DNA_pol_X_lyase_dom.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR003141. Pol/His_phosphatase_N.
IPR016195. Pol/histidinol_Pase-like.
IPR029398. PolB_thumb.
IPR022311. UCP005047_YshC.
[Graphical view]
PfamiPF14791. DNA_pol_B_thumb. 1 hit.
PF14716. HHH_8. 1 hit.
[Graphical view]
PIRSFiPIRSF005047. UCP005047_YshC. 1 hit.
SMARTiSM00278. HhH1. 3 hits.
SM00481. POLIIIAc. 1 hit.
SM00483. POLXc. 1 hit.
[Graphical view]
SUPFAMiSSF47802. SSF47802. 1 hit.
SSF89550. SSF89550. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9RX48-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTLPPDAPSR HRLVHALERT ADLLDILGGE DFKSRAYRSA ARSLEELNEE
60 70 80 90 100
TPELLAREFT GIPKVGKGIA AELSDFARSG TFAPLEAAAG QLPPGLLDLL
110 120 130 140 150
GVRGLGPKKI RSLWLAGIDS LERLREAAES GELAGLKGFG AKSAATILEN
160 170 180 190 200
VVFLFEARQR QSLRAGLAVA EELAGALTDL SPAPAGDVRR GLETVRAAEL
210 220 230 240 250
TVTGTPDDVL ARLPELTVQG DGVLSGDYEG VPVEIACAPA EARGALDLLR
260 270 280 290 300
SGEHFAGQVQ AAAQARGFTL TAGGLSRGDE VLPTPTEAVV FHALDLPFRP
310 320 330 340 350
AEYREPEHDD LWQTLPDPAE LVTVGDLRGM IHTHSTWSDG GASIREMAEA
360 370 380 390 400
TLTLGHEFLG TADHSRAAYY ANGLTIERLR EQLKEIRELQ RAGLPIVAGS
410 420 430 440 450
EVDILDDGSL DFPDDVLGEL DYVVVSVHSN FTLDAARQTE RLIRAVSHPL
460 470 480 490 500
VTVLGHATGR LLLRRPGYAL DLDAVLGACE ANGTVVEINA NAARLDLDWR
510 520 530 540 550
EALRWRERLK FAINTDAHVP GGLRDARYGV MQARKAGLTP AHVVNSLGRA
560 570
EFLDFVARQR AARGAPGPAD RA
Length:572
Mass (Da):61,297
Last modified:May 1, 2000 - v1
Checksum:iFA1132DB42150825
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF10047.1.
PIRiC75515.
RefSeqiNP_294190.1. NC_001263.1.
WP_010887112.1. NC_001263.1.

Genome annotation databases

EnsemblBacteriaiAAF10047; AAF10047; DR_0467.
GeneIDi1798316.
KEGGidra:DR_0467.
PATRICi21628458. VBIDeiRad64572_0645.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF10047.1.
PIRiC75515.
RefSeqiNP_294190.1. NC_001263.1.
WP_010887112.1. NC_001263.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2W9MX-ray2.46A/B1-572[»]
ProteinModelPortaliQ9RX48.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_0467.

Proteomic databases

PRIDEiQ9RX48.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF10047; AAF10047; DR_0467.
GeneIDi1798316.
KEGGidra:DR_0467.
PATRICi21628458. VBIDeiRad64572_0645.

Phylogenomic databases

eggNOGiENOG4105DCG. Bacteria.
COG1387. LUCA.
COG1796. LUCA.
HOGENOMiHOG000292866.
InParanoidiQ9RX48.
KOiK02347.
OMAiHNHSTYS.
OrthoDBiEOG6QCD6J.

Enzyme and pathway databases

BioCyciDRAD243230:GH46-478-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ9RX48.

Family and domain databases

Gene3Di1.10.150.110. 1 hit.
3.30.210.10. 1 hit.
InterProiIPR002054. DNA-dir_DNA_pol_X.
IPR010996. DNA_pol_b-like_N.
IPR027421. DNA_pol_X_lyase_dom.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR003141. Pol/His_phosphatase_N.
IPR016195. Pol/histidinol_Pase-like.
IPR029398. PolB_thumb.
IPR022311. UCP005047_YshC.
[Graphical view]
PfamiPF14791. DNA_pol_B_thumb. 1 hit.
PF14716. HHH_8. 1 hit.
[Graphical view]
PIRSFiPIRSF005047. UCP005047_YshC. 1 hit.
SMARTiSM00278. HhH1. 3 hits.
SM00481. POLIIIAc. 1 hit.
SM00483. POLXc. 1 hit.
[Graphical view]
SUPFAMiSSF47802. SSF47802. 1 hit.
SSF89550. SSF89550. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422Imported.
  2. "The family X DNA polymerase from Deinococcus radiodurans adopts a non-standard extended conformation."
    Leulliot N., Cladiere L., Lecointe F., Durand D., Hubscher U., van Tilbeurgh H.
    J. Biol. Chem. 284:11992-11999(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.46 ANGSTROMS) IN COMPLEX WITH ZINC.

Entry informationi

Entry nameiQ9RX48_DEIRA
AccessioniPrimary (citable) accession number: Q9RX48
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: May 11, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.