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Protein

50S ribosomal protein L19

Gene

rplS

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (By similarity). Binds the 23S rRNA.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciDRAD243230:GH46-777-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L19
Gene namesi
Name:rplS
Ordered Locus Names:DR_0755
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 16616650S ribosomal protein L19PRO_0000163448Add
BLAST

Proteomic databases

PRIDEiQ9RWB4.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L14.6 Publications

Protein-protein interaction databases

STRINGi243230.DR_0755.

Structurei

Secondary structure

1
166
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi9 – 1810Combined sources
Beta strandi28 – 303Combined sources
Beta strandi32 – 409Combined sources
Beta strandi41 – 433Combined sources
Beta strandi45 – 5814Combined sources
Helixi61 – 633Combined sources
Beta strandi65 – 728Combined sources
Beta strandi75 – 828Combined sources
Beta strandi88 – 958Combined sources
Beta strandi100 – 1023Combined sources
Helixi105 – 1073Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10N1-166[»]
1NWXX-ray3.50N1-166[»]
1NWYX-ray3.30N1-166[»]
1SM1X-ray3.42N1-166[»]
1XBPX-ray3.50N1-166[»]
2ZJPX-ray3.70M1-166[»]
2ZJQX-ray3.30M1-166[»]
2ZJRX-ray2.91M1-166[»]
3CF5X-ray3.30M1-166[»]
3DLLX-ray3.50M1-166[»]
3PIOX-ray3.25M1-166[»]
3PIPX-ray3.45M1-166[»]
4IO9X-ray3.20M1-166[»]
4IOAX-ray3.20M1-166[»]
4IOCX-ray3.60M1-166[»]
4U67X-ray3.65M1-166[»]
4V49X-ray8.70N2-126[»]
4V4AX-ray9.50N2-126[»]
4V4GX-ray11.50Q2-126[»]
4WFNX-ray3.54M2-166[»]
5DM6X-ray2.90M2-106[»]
5DM7X-ray3.00M2-115[»]
ProteinModelPortaliQ9RWB4.
SMRiQ9RWB4. Positions 2-126.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RWB4.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L19P family.Curated

Phylogenomic databases

eggNOGiENOG4108YY1. Bacteria.
COG0335. LUCA.
HOGENOMiHOG000016264.
InParanoidiQ9RWB4.
KOiK02884.
OMAiQWEYEAM.
OrthoDBiPOG091H02BF.

Family and domain databases

HAMAPiMF_00402. Ribosomal_L19. 1 hit.
InterProiIPR001857. Ribosomal_L19.
IPR018257. Ribosomal_L19_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR15680. PTHR15680. 1 hit.
PfamiPF01245. Ribosomal_L19. 1 hit.
[Graphical view]
PIRSFiPIRSF002191. Ribosomal_L19. 1 hit.
PRINTSiPR00061. RIBOSOMALL19.
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01024. rplS_bact. 1 hit.
PROSITEiPS01015. RIBOSOMAL_L19. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9RWB4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQTHIKINRG ELLRGIEQDH TRQLPDFRPG DTVRVDTKVR EGNRTRSQAF
60 70 80 90 100
EGVVIAINGS GSRKSFTVRK ISFGEGVERV FPFASPLVNQ VTIVERGKVR
110 120 130 140 150
RAKLYYLREL RGKAARIKSD RSRVMKDAAR AQQDKANASA SQAAAAQADV
160
TVISAAPEVA PETQGE
Length:166
Mass (Da):18,316
Last modified:May 1, 2000 - v1
Checksum:i1DA8E740601FFAF9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF10334.1.
PIRiG75478.
RefSeqiNP_294479.1. NC_001263.1.
WP_010887401.1. NC_001263.1.

Genome annotation databases

EnsemblBacteriaiAAF10334; AAF10334; DR_0755.
GeneIDi1800020.
KEGGidra:DR_0755.
PATRICi21629058. VBIDeiRad64572_0935.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF10334.1.
PIRiG75478.
RefSeqiNP_294479.1. NC_001263.1.
WP_010887401.1. NC_001263.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10N1-166[»]
1NWXX-ray3.50N1-166[»]
1NWYX-ray3.30N1-166[»]
1SM1X-ray3.42N1-166[»]
1XBPX-ray3.50N1-166[»]
2ZJPX-ray3.70M1-166[»]
2ZJQX-ray3.30M1-166[»]
2ZJRX-ray2.91M1-166[»]
3CF5X-ray3.30M1-166[»]
3DLLX-ray3.50M1-166[»]
3PIOX-ray3.25M1-166[»]
3PIPX-ray3.45M1-166[»]
4IO9X-ray3.20M1-166[»]
4IOAX-ray3.20M1-166[»]
4IOCX-ray3.60M1-166[»]
4U67X-ray3.65M1-166[»]
4V49X-ray8.70N2-126[»]
4V4AX-ray9.50N2-126[»]
4V4GX-ray11.50Q2-126[»]
4WFNX-ray3.54M2-166[»]
5DM6X-ray2.90M2-106[»]
5DM7X-ray3.00M2-115[»]
ProteinModelPortaliQ9RWB4.
SMRiQ9RWB4. Positions 2-126.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_0755.

Proteomic databases

PRIDEiQ9RWB4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF10334; AAF10334; DR_0755.
GeneIDi1800020.
KEGGidra:DR_0755.
PATRICi21629058. VBIDeiRad64572_0935.

Phylogenomic databases

eggNOGiENOG4108YY1. Bacteria.
COG0335. LUCA.
HOGENOMiHOG000016264.
InParanoidiQ9RWB4.
KOiK02884.
OMAiQWEYEAM.
OrthoDBiPOG091H02BF.

Enzyme and pathway databases

BioCyciDRAD243230:GH46-777-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ9RWB4.

Family and domain databases

HAMAPiMF_00402. Ribosomal_L19. 1 hit.
InterProiIPR001857. Ribosomal_L19.
IPR018257. Ribosomal_L19_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR15680. PTHR15680. 1 hit.
PfamiPF01245. Ribosomal_L19. 1 hit.
[Graphical view]
PIRSFiPIRSF002191. Ribosomal_L19. 1 hit.
PRINTSiPR00061. RIBOSOMALL19.
SUPFAMiSSF50104. SSF50104. 1 hit.
TIGRFAMsiTIGR01024. rplS_bact. 1 hit.
PROSITEiPS01015. RIBOSOMAL_L19. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL19_DEIRA
AccessioniPrimary (citable) accession number: Q9RWB4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 2001
Last sequence update: May 1, 2000
Last modified: September 7, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.