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Protein

50S ribosomal protein L19

Gene

rplS

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (By similarity). Binds the 23S rRNA.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L19
Gene namesi
Name:rplS
Ordered Locus Names:DR_0755
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001634481 – 16650S ribosomal protein L19Add BLAST166

Proteomic databases

PRIDEiQ9RWB4

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L14.6 Publications

Protein-protein interaction databases

STRINGi243230.DR_0755

Structurei

Secondary structure

1166
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi9 – 18Combined sources10
Beta strandi28 – 30Combined sources3
Beta strandi32 – 40Combined sources9
Beta strandi41 – 43Combined sources3
Beta strandi45 – 58Combined sources14
Helixi61 – 63Combined sources3
Beta strandi65 – 72Combined sources8
Beta strandi75 – 82Combined sources8
Beta strandi88 – 95Combined sources8
Beta strandi100 – 102Combined sources3
Helixi105 – 107Combined sources3
Beta strandi112 – 116Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10N1-166[»]
1NWXX-ray3.50N1-166[»]
1NWYX-ray3.30N1-166[»]
1SM1X-ray3.42N1-166[»]
1XBPX-ray3.50N1-166[»]
2ZJPX-ray3.70M1-166[»]
2ZJQX-ray3.30M1-166[»]
2ZJRX-ray2.91M1-166[»]
3CF5X-ray3.30M1-166[»]
3DLLX-ray3.50M1-166[»]
3PIOX-ray3.25M1-166[»]
3PIPX-ray3.45M1-166[»]
4IO9X-ray3.20M1-166[»]
4IOAX-ray3.20M1-166[»]
4IOCX-ray3.60M1-166[»]
4U67X-ray3.65M1-166[»]
4V49X-ray8.70N2-126[»]
4V4AX-ray9.50N2-126[»]
4V4GX-ray11.50Q2-126[»]
4WFNX-ray3.54M2-166[»]
5DM6X-ray2.90M2-106[»]
5DM7X-ray3.00M2-115[»]
5JVGX-ray3.43M1-166[»]
5JVHX-ray3.58M1-166[»]
ProteinModelPortaliQ9RWB4
SMRiQ9RWB4
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RWB4

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108YY1 Bacteria
COG0335 LUCA
HOGENOMiHOG000016264
InParanoidiQ9RWB4
KOiK02884
OMAiTITVYYE
OrthoDBiPOG091H02BF

Family and domain databases

Gene3Di2.30.30.790, 1 hit
HAMAPiMF_00402 Ribosomal_L19, 1 hit
InterProiView protein in InterPro
IPR038657 L19_sf
IPR001857 Ribosomal_L19
IPR018257 Ribosomal_L19_CS
IPR008991 Translation_prot_SH3-like_sf
PANTHERiPTHR15680 PTHR15680, 2 hits
PfamiView protein in Pfam
PF01245 Ribosomal_L19, 1 hit
PIRSFiPIRSF002191 Ribosomal_L19, 1 hit
PRINTSiPR00061 RIBOSOMALL19
SUPFAMiSSF50104 SSF50104, 1 hit
TIGRFAMsiTIGR01024 rplS_bact, 1 hit
PROSITEiView protein in PROSITE
PS01015 RIBOSOMAL_L19, 1 hit

Sequencei

Sequence statusi: Complete.

Q9RWB4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQTHIKINRG ELLRGIEQDH TRQLPDFRPG DTVRVDTKVR EGNRTRSQAF
60 70 80 90 100
EGVVIAINGS GSRKSFTVRK ISFGEGVERV FPFASPLVNQ VTIVERGKVR
110 120 130 140 150
RAKLYYLREL RGKAARIKSD RSRVMKDAAR AQQDKANASA SQAAAAQADV
160
TVISAAPEVA PETQGE
Length:166
Mass (Da):18,316
Last modified:May 1, 2000 - v1
Checksum:i1DA8E740601FFAF9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA Translation: AAF10334.1
PIRiG75478
RefSeqiNP_294479.1, NC_001263.1
WP_010887401.1, NZ_CP015081.1

Genome annotation databases

EnsemblBacteriaiAAF10334; AAF10334; DR_0755
GeneIDi1800020
KEGGidra:DR_0755
PATRICifig|243230.17.peg.935

Similar proteinsi

Entry informationi

Entry nameiRL19_DEIRA
AccessioniPrimary (citable) accession number: Q9RWB4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 1, 2001
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 120 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome
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Main funding by: National Institutes of Health