DNA gyrase, subunit B - Deinococcus radiodurans

Preferred order of sections

Names and origin

Protein names

Submitted name:
DNA gyrase, subunit B EMBL AAF10481.1

Gene names

Ordered Locus Names:

DR_0906

Organism

Deinococcus radiodurans

Taxonomic identifier

1299 [NCBI]

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus

Protein attributes

Sequence length	663 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding RuleBase RU000380 SAAS SAAS002288 Nucleotide-binding
Molecular function	Isomerase Topoisomerase RuleBase RU000380 SAAS SAAS002288
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q9RVW5 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: C53C913E20AC95E5
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FASTA

663

73,158

        10         20         30         40         50         60 
MSFSHAAGTA DDYNADQISV LEGMDAVRKR PGMYVQGGTG IDGYHQLLTE IIDNGIDEGL 

        70         80         90        100        110        120 
AGFAGEIQIV LHADGSATVT DDGRGIPVDI MKSKGRPAIE VIFSELHAGG KFGQGAYKVS 

       130        140        150        160        170        180 
GGLHGVGSTV VNALSTYLDV TVNKHKQLHH IRFERGVLVQ PLEVLGATPK DVKWSTKVSF 

       190        200        210        220        230        240 
HPDPTIFKEF DNQFDYLRIR NRLRELAYLT GLKIVIRDER TELHGGEIKE EVFHEKGGIA 

       250        260        270        280        290        300 
NFARALVTDD TKLLYDQPVV MRGTHAEVEV EVAFIHANTY ASDNILTYAN MIRTRDGGTP 

       310        320        330        340        350        360 
LTGFKTAYTR VLNKYAKDKN LIKAGNPVPS GDDLLEGIYC VVSVKVGDPQ FESQAKVKLL 

       370        380        390        400        410        420 
NSEAQTAVNA IVGEKFAQFL EENPKIGKTI VEKAAEAARA RDAARKARDI VRRSNPLEND 

       430        440        450        460        470        480 
DLPGKLADCS SQDPAESELF IVEGNSAGGS AKGGRERRFQ AILPLRGKIL NVEKAELNKI 

       490        500        510        520        530        540 
LKNAEIRSLI GAIGAGFDGK GEEMRFDLEN LRYHKIVIMT DADMDGGHIT TLLLTFFFRF 

       550        560        570        580        590        600 
MRPIVEQGHL YIAQPPLYKI TVGAQTKNNK GVYLFTNEEL KEHVADAVKA GKKYEIQRFK 

       610        620        630        640        650        660 
GLGEMNAEQL WETTMNPETR VLKRVSIDDL IIANEIFDAL MGSEVAPRKD FIRENARFAE 


ISV

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References

[1]

"Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1."
White O., Eisen J.A., Heidelberg J.F., Hickey E.K., Peterson J.D., Dodson R.J., Haft D.H., Gwinn M.L., Nelson W.C., Richardson D.L., Moffat K.S., Qin H., Jiang L., Pamphile W., Crosby M., Shen M., Vamathevan J.J., Lam P.

Fraser C.M.
Science 286:1571-1577(1999) [PubMed: 10567266] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422.

+

Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE000513 Genomic DNA. Translation: AAF10481.1.
PIR	A75461.
RefSeq	NP_294630.1. NC_001263.1.
3D structure databases
HSSP	HSSP built from PDB template 1AJ6 based on UniProtKB P06982.
ProteinModelPortal	Q9RVW5.
SMR	Q9RVW5. Positions 18-411.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1799432.
GenomeReviews	Gene locus DR_0906 in contig AE000513_GR.
KEGG	dra:DR_0906.
NMPDR	fig\|243230.1.peg.1089.
PATRIC	21629376. VBIDeiRad64572_1092.
TIGR	DR_0906.
Phylogenomic databases
HOGENOM	HBG304889.
OMA	DCSSRDP.
ProtClustDB	PRK05644.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02470.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q9RVW5_DEIRA

Accession

Primary (citable) accession number: Q9RVW5

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	January 25, 2012
This is version 84 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Family and domain databases

Entry information