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Q9RUV2

- SODM_DEIRA

UniProt

Q9RUV2 - SODM_DEIRA

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Protein
Superoxide dismutase [Mn]
Gene
sodA, DR_1279
Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems By similarity.

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.

Cofactori

Binds 1 manganese ion per subunit By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi27 – 271Manganese By similarity
Metal bindingi81 – 811Manganese By similarity
Metal bindingi173 – 1731Manganese By similarity
Metal bindingi177 – 1771Manganese By similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: CACAO

GO - Biological processi

  1. removal of superoxide radicals Source: GOC
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

Manganese, Metal-binding

Enzyme and pathway databases

BioCyciDRAD243230:GH46-1308-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Mn] (EC:1.15.1.1)
Alternative name(s):
MnSOD
Gene namesi
Name:sodA
Ordered Locus Names:DR_1279
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
ProteomesiUP000002524: Chromosome I

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 211210Superoxide dismutase [Mn]
PRO_0000160029Add
BLAST

Interactioni

Subunit structurei

Homodimer By similarity.

Protein-protein interaction databases

STRINGi243230.DR_1279.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni12 – 187
Helixi21 – 299
Helixi31 – 4313
Turni47 – 504
Helixi53 – 564
Turni60 – 623
Helixi65 – 673
Helixi68 – 8619
Helixi102 – 11211
Helixi115 – 12814
Beta strandi131 – 14010
Beta strandi143 – 1508
Helixi155 – 1573
Helixi159 – 1624
Beta strandi166 – 1738
Helixi176 – 1783
Helixi180 – 1834
Helixi187 – 1948
Helixi195 – 1973
Helixi200 – 21011

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1Y67X-ray1.85A/B/C/D2-211[»]
2AW9X-ray2.70A/B2-211[»]
2CDYX-ray2.00A/B/C/D2-211[»]
2CE4X-ray2.20A/B2-211[»]
3KKYX-ray1.80A/B1-211[»]
ProteinModelPortaliQ9RUV2.
SMRiQ9RUV2. Positions 2-211.

Miscellaneous databases

EvolutionaryTraceiQ9RUV2.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0605.
HOGENOMiHOG000013583.
KOiK04564.
OMAiPLPYDYN.
OrthoDBiEOG63NMNT.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9RUV2-1 [UniParc]FASTAAdd to Basket

« Hide

MAYTLPQLPY AYDALEPHID ARTMEIHHTK HHQTYVDNAN KALEGTEFAD    50
LPVEQLIQQL DRVPADKKGA LRNNAGGHAN HSMFWQIMGQ GQGQNGANQP 100
SGELLDAINS AFGSFDAFKQ KFEDAAKTRF GSGWAWLVVK DGKLDVVSTA 150
NQDNPLMGEA IAGVSGTPIL GVDVWEHAYY LNYQNRRPDY LAAFWNVVNW 200
DEVSKRYAAA K 211
Length:211
Mass (Da):23,478
Last modified:January 23, 2007 - v3
Checksum:iA71F22F516A1897E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE000513 Genomic DNA. Translation: AAF10851.1.
PIRiB75415.
RefSeqiNP_295003.1. NC_001263.1.

Genome annotation databases

EnsemblBacteriaiAAF10851; AAF10851; DR_1279.
GeneIDi1797407.
KEGGidra:DR_1279.
PATRICi21630152. VBIDeiRad64572_1475.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE000513 Genomic DNA. Translation: AAF10851.1 .
PIRi B75415.
RefSeqi NP_295003.1. NC_001263.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1Y67 X-ray 1.85 A/B/C/D 2-211 [» ]
2AW9 X-ray 2.70 A/B 2-211 [» ]
2CDY X-ray 2.00 A/B/C/D 2-211 [» ]
2CE4 X-ray 2.20 A/B 2-211 [» ]
3KKY X-ray 1.80 A/B 1-211 [» ]
ProteinModelPortali Q9RUV2.
SMRi Q9RUV2. Positions 2-211.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 243230.DR_1279.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAF10851 ; AAF10851 ; DR_1279 .
GeneIDi 1797407.
KEGGi dra:DR_1279.
PATRICi 21630152. VBIDeiRad64572_1475.

Phylogenomic databases

eggNOGi COG0605.
HOGENOMi HOG000013583.
KOi K04564.
OMAi PLPYDYN.
OrthoDBi EOG63NMNT.

Enzyme and pathway databases

BioCyci DRAD243230:GH46-1308-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q9RUV2.

Family and domain databases

InterProi IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view ]
PANTHERi PTHR11404. PTHR11404. 1 hit.
Pfami PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view ]
PIRSFi PIRSF000349. SODismutase. 1 hit.
PRINTSi PR01703. MNSODISMTASE.
SUPFAMi SSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEi PS00088. SOD_MN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422.
  2. Joshi B.S., Apte S.K., Schmid R., Altendorf K.
    Submitted (APR-2003) to UniProtKB
    Cited for: PROTEIN SEQUENCE OF 2-13.
    Strain: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422.

Entry informationi

Entry nameiSODM_DEIRA
AccessioniPrimary (citable) accession number: Q9RUV2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2003
Last sequence update: January 23, 2007
Last modified: July 9, 2014
This is version 97 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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