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Protein

50S ribosomal protein L20

Gene

rplT

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds directly to 23S rRNA, probably serving to organize its structure.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L20
Gene namesi
Name:rplT
Ordered Locus Names:DR_2004
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001771531 – 11850S ribosomal protein L20Add BLAST118

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts proteins L13 and L21.6 Publications

Protein-protein interaction databases

STRINGi243230.DR_2004.

Structurei

Secondary structure

1118
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi9 – 20Combined sources12
Turni21 – 23Combined sources3
Helixi26 – 29Combined sources4
Helixi32 – 71Combined sources40
Helixi76 – 85Combined sources10
Helixi92 – 101Combined sources10
Helixi103 – 117Combined sources15

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10O1-118[»]
1NWXX-ray3.50O1-118[»]
1NWYX-ray3.30O1-118[»]
1SM1X-ray3.42O1-118[»]
1XBPX-ray3.50O1-118[»]
2ZJPX-ray3.70N1-118[»]
2ZJQX-ray3.30N1-118[»]
2ZJRX-ray2.91N1-118[»]
3CF5X-ray3.30N1-118[»]
3DLLX-ray3.50N1-118[»]
3PIOX-ray3.25N1-118[»]
3PIPX-ray3.45N1-118[»]
4IO9X-ray3.20N1-118[»]
4IOAX-ray3.20N1-118[»]
4IOCX-ray3.60N1-118[»]
4U67X-ray3.65N1-118[»]
4V49X-ray8.70O2-118[»]
4V4AX-ray9.50O2-118[»]
4V4GX-ray11.50R2-118[»]
4V4TX-ray6.46U1-118[»]
4WFNX-ray3.54N1-118[»]
5DM6X-ray2.90N2-118[»]
5DM7X-ray3.00N2-118[»]
ProteinModelPortaliQ9RSW7.
SMRiQ9RSW7.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RSW7.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L20P family.Curated

Phylogenomic databases

eggNOGiENOG4108YZX. Bacteria.
COG0292. LUCA.
HOGENOMiHOG000035046.
InParanoidiQ9RSW7.
KOiK02887.
OMAiRKAKEQM.
OrthoDBiPOG091H01B4.

Family and domain databases

CDDicd07026. Ribosomal_L20. 1 hit.
HAMAPiMF_00382. Ribosomal_L20. 1 hit.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9RSW7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRAKTGIVR RRRHKKVLKR AKGFWGSRSK QYRNAFQTLL NAATYEYRDR
60 70 80 90 100
RNKKRDFRRL WIQRINAGAR LHGMNYSTFI NGLKRANIDL NRKVLADIAA
110
REPEAFKALV DASRNARQ
Length:118
Mass (Da):13,957
Last modified:May 1, 2000 - v1
Checksum:i94DB4F24ECD78DB6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11553.1.
PIRiA75326.
RefSeqiNP_295727.1. NC_001263.1.
WP_010888637.1. NZ_CP015081.1.

Genome annotation databases

EnsemblBacteriaiAAF11553; AAF11553; DR_2004.
GeneIDi1798901.
KEGGidra:DR_2004.
PATRICi21631668. VBIDeiRad64572_2227.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11553.1.
PIRiA75326.
RefSeqiNP_295727.1. NC_001263.1.
WP_010888637.1. NZ_CP015081.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10O1-118[»]
1NWXX-ray3.50O1-118[»]
1NWYX-ray3.30O1-118[»]
1SM1X-ray3.42O1-118[»]
1XBPX-ray3.50O1-118[»]
2ZJPX-ray3.70N1-118[»]
2ZJQX-ray3.30N1-118[»]
2ZJRX-ray2.91N1-118[»]
3CF5X-ray3.30N1-118[»]
3DLLX-ray3.50N1-118[»]
3PIOX-ray3.25N1-118[»]
3PIPX-ray3.45N1-118[»]
4IO9X-ray3.20N1-118[»]
4IOAX-ray3.20N1-118[»]
4IOCX-ray3.60N1-118[»]
4U67X-ray3.65N1-118[»]
4V49X-ray8.70O2-118[»]
4V4AX-ray9.50O2-118[»]
4V4GX-ray11.50R2-118[»]
4V4TX-ray6.46U1-118[»]
4WFNX-ray3.54N1-118[»]
5DM6X-ray2.90N2-118[»]
5DM7X-ray3.00N2-118[»]
ProteinModelPortaliQ9RSW7.
SMRiQ9RSW7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_2004.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF11553; AAF11553; DR_2004.
GeneIDi1798901.
KEGGidra:DR_2004.
PATRICi21631668. VBIDeiRad64572_2227.

Phylogenomic databases

eggNOGiENOG4108YZX. Bacteria.
COG0292. LUCA.
HOGENOMiHOG000035046.
InParanoidiQ9RSW7.
KOiK02887.
OMAiRKAKEQM.
OrthoDBiPOG091H01B4.

Miscellaneous databases

EvolutionaryTraceiQ9RSW7.

Family and domain databases

CDDicd07026. Ribosomal_L20. 1 hit.
HAMAPiMF_00382. Ribosomal_L20. 1 hit.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL20_DEIRA
AccessioniPrimary (citable) accession number: Q9RSW7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 2001
Last sequence update: May 1, 2000
Last modified: November 2, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.