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Protein

50S ribosomal protein L20

Gene

rplT

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds directly to 23S rRNA, probably serving to organize its structure.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L20
Gene namesi
Name:rplT
Ordered Locus Names:DR_2004
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001771531 – 11850S ribosomal protein L20Add BLAST118

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts proteins L13 and L21.6 Publications

Protein-protein interaction databases

STRINGi243230.DR_2004.

Structurei

Secondary structure

1118
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi9 – 20Combined sources12
Turni21 – 23Combined sources3
Helixi26 – 29Combined sources4
Helixi32 – 71Combined sources40
Helixi76 – 85Combined sources10
Helixi92 – 101Combined sources10
Helixi103 – 117Combined sources15

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10O1-118[»]
1NWXX-ray3.50O1-118[»]
1NWYX-ray3.30O1-118[»]
1SM1X-ray3.42O1-118[»]
1XBPX-ray3.50O1-118[»]
2ZJPX-ray3.70N1-118[»]
2ZJQX-ray3.30N1-118[»]
2ZJRX-ray2.91N1-118[»]
3CF5X-ray3.30N1-118[»]
3DLLX-ray3.50N1-118[»]
3PIOX-ray3.25N1-118[»]
3PIPX-ray3.45N1-118[»]
4IO9X-ray3.20N1-118[»]
4IOAX-ray3.20N1-118[»]
4IOCX-ray3.60N1-118[»]
4U67X-ray3.65N1-118[»]
4V49X-ray8.70O2-118[»]
4V4AX-ray9.50O2-118[»]
4V4GX-ray11.50R2-118[»]
4V4TX-ray6.46U1-118[»]
4WFNX-ray3.54N1-118[»]
5DM6X-ray2.90N2-118[»]
5DM7X-ray3.00N2-118[»]
5JVGX-ray3.43N1-118[»]
5JVHX-ray3.58N1-118[»]
ProteinModelPortaliQ9RSW7.
SMRiQ9RSW7.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RSW7.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108YZX. Bacteria.
COG0292. LUCA.
HOGENOMiHOG000035046.
InParanoidiQ9RSW7.
KOiK02887.
OMAiDLAMNHP.
OrthoDBiPOG091H01B4.

Family and domain databases

CDDicd07026. Ribosomal_L20. 1 hit.
Gene3Di1.10.1900.20. 1 hit.
HAMAPiMF_00382. Ribosomal_L20. 1 hit.
InterProiView protein in InterPro
IPR005813. Ribosomal_L20.
IPR035566. Ribosomal_protein_L20_C.
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiView protein in Pfam
PF00453. Ribosomal_L20. 1 hit.
PRINTSiPR00062. RIBOSOMALL20.
SUPFAMiSSF74731. SSF74731. 1 hit.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00937. RIBOSOMAL_L20. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9RSW7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRAKTGIVR RRRHKKVLKR AKGFWGSRSK QYRNAFQTLL NAATYEYRDR
60 70 80 90 100
RNKKRDFRRL WIQRINAGAR LHGMNYSTFI NGLKRANIDL NRKVLADIAA
110
REPEAFKALV DASRNARQ
Length:118
Mass (Da):13,957
Last modified:May 1, 2000 - v1
Checksum:i94DB4F24ECD78DB6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11553.1.
PIRiA75326.
RefSeqiNP_295727.1. NC_001263.1.
WP_010888637.1. NZ_CP015081.1.

Genome annotation databases

EnsemblBacteriaiAAF11553; AAF11553; DR_2004.
GeneIDi1798901.
KEGGidra:DR_2004.
PATRICifig|243230.17.peg.2227.

Similar proteinsi

Entry informationi

Entry nameiRL20_DEIRA
AccessioniPrimary (citable) accession number: Q9RSW7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 1, 2001
Last sequence update: May 1, 2000
Last modified: November 22, 2017
This is version 121 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families