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Protein

50S ribosomal protein L20

Gene

rplT

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds directly to 23S rRNA, probably serving to organize its structure.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciDRAD243230:GH46-2038-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L20
Gene namesi
Name:rplT
Ordered Locus Names:DR_2004
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11811850S ribosomal protein L20PRO_0000177153Add
BLAST

Proteomic databases

PRIDEiQ9RSW7.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts proteins L13 and L21.6 Publications

Protein-protein interaction databases

STRINGi243230.DR_2004.

Structurei

Secondary structure

1
118
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi9 – 2012Combined sources
Turni21 – 233Combined sources
Helixi26 – 294Combined sources
Helixi32 – 7140Combined sources
Helixi76 – 8510Combined sources
Helixi92 – 10110Combined sources
Helixi103 – 11715Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10O1-118[»]
1NWXX-ray3.50O1-118[»]
1NWYX-ray3.30O1-118[»]
1SM1X-ray3.42O1-118[»]
1XBPX-ray3.50O1-118[»]
2ZJPX-ray3.70N1-118[»]
2ZJQX-ray3.30N1-118[»]
2ZJRX-ray2.91N1-118[»]
3CF5X-ray3.30N1-118[»]
3DLLX-ray3.50N1-118[»]
3PIOX-ray3.25N1-118[»]
3PIPX-ray3.45N1-118[»]
4IO9X-ray3.20N1-118[»]
4IOAX-ray3.20N1-118[»]
4IOCX-ray3.60N1-118[»]
4U67X-ray3.65N1-118[»]
4V49X-ray8.70O2-118[»]
4V4AX-ray9.50O2-118[»]
4V4GX-ray11.50R2-118[»]
4V4TX-ray6.46U1-118[»]
4WFNX-ray3.54N1-118[»]
5DM6X-ray2.90N2-118[»]
5DM7X-ray3.00N2-118[»]
ProteinModelPortaliQ9RSW7.
SMRiQ9RSW7. Positions 2-118.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RSW7.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L20P family.Curated

Phylogenomic databases

eggNOGiENOG4108YZX. Bacteria.
COG0292. LUCA.
HOGENOMiHOG000035046.
InParanoidiQ9RSW7.
KOiK02887.
OMAiRKAKEQM.
OrthoDBiPOG091H01B4.

Family and domain databases

CDDicd07026. Ribosomal_L20. 1 hit.
HAMAPiMF_00382. Ribosomal_L20. 1 hit.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9RSW7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRAKTGIVR RRRHKKVLKR AKGFWGSRSK QYRNAFQTLL NAATYEYRDR
60 70 80 90 100
RNKKRDFRRL WIQRINAGAR LHGMNYSTFI NGLKRANIDL NRKVLADIAA
110
REPEAFKALV DASRNARQ
Length:118
Mass (Da):13,957
Last modified:May 1, 2000 - v1
Checksum:i94DB4F24ECD78DB6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11553.1.
PIRiA75326.
RefSeqiNP_295727.1. NC_001263.1.
WP_010888637.1. NC_001263.1.

Genome annotation databases

EnsemblBacteriaiAAF11553; AAF11553; DR_2004.
GeneIDi1798901.
KEGGidra:DR_2004.
PATRICi21631668. VBIDeiRad64572_2227.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11553.1.
PIRiA75326.
RefSeqiNP_295727.1. NC_001263.1.
WP_010888637.1. NC_001263.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10O1-118[»]
1NWXX-ray3.50O1-118[»]
1NWYX-ray3.30O1-118[»]
1SM1X-ray3.42O1-118[»]
1XBPX-ray3.50O1-118[»]
2ZJPX-ray3.70N1-118[»]
2ZJQX-ray3.30N1-118[»]
2ZJRX-ray2.91N1-118[»]
3CF5X-ray3.30N1-118[»]
3DLLX-ray3.50N1-118[»]
3PIOX-ray3.25N1-118[»]
3PIPX-ray3.45N1-118[»]
4IO9X-ray3.20N1-118[»]
4IOAX-ray3.20N1-118[»]
4IOCX-ray3.60N1-118[»]
4U67X-ray3.65N1-118[»]
4V49X-ray8.70O2-118[»]
4V4AX-ray9.50O2-118[»]
4V4GX-ray11.50R2-118[»]
4V4TX-ray6.46U1-118[»]
4WFNX-ray3.54N1-118[»]
5DM6X-ray2.90N2-118[»]
5DM7X-ray3.00N2-118[»]
ProteinModelPortaliQ9RSW7.
SMRiQ9RSW7. Positions 2-118.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_2004.

Proteomic databases

PRIDEiQ9RSW7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF11553; AAF11553; DR_2004.
GeneIDi1798901.
KEGGidra:DR_2004.
PATRICi21631668. VBIDeiRad64572_2227.

Phylogenomic databases

eggNOGiENOG4108YZX. Bacteria.
COG0292. LUCA.
HOGENOMiHOG000035046.
InParanoidiQ9RSW7.
KOiK02887.
OMAiRKAKEQM.
OrthoDBiPOG091H01B4.

Enzyme and pathway databases

BioCyciDRAD243230:GH46-2038-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ9RSW7.

Family and domain databases

CDDicd07026. Ribosomal_L20. 1 hit.
HAMAPiMF_00382. Ribosomal_L20. 1 hit.
InterProiIPR005813. Ribosomal_L20.
[Graphical view]
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiPF00453. Ribosomal_L20. 1 hit.
[Graphical view]
PRINTSiPR00062. RIBOSOMALL20.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL20_DEIRA
AccessioniPrimary (citable) accession number: Q9RSW7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 2001
Last sequence update: May 1, 2000
Last modified: September 7, 2016
This is version 111 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.