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Protein

50S ribosomal protein L11

Gene

rplK

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.Curated

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L11UniRule annotation
Gene namesi
Name:rplKUniRule annotation
Ordered Locus Names:DR_2046
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001042801 – 14450S ribosomal protein L11Add BLAST144

Post-translational modificationi

One or more lysine residues are methylated.UniRule annotation

Keywords - PTMi

Methylation

Interactioni

Subunit structurei

Part of the ribosomal stalk of the 50S ribosomal subunit. Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex (By similarity). Contacts the CTC protein (RL25).UniRule annotation6 Publications

Protein-protein interaction databases

STRINGi243230.DR_2046.

Structurei

Secondary structure

1144
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi6 – 9Combined sources4
Beta strandi14 – 16Combined sources3
Beta strandi20 – 27Combined sources8
Turni28 – 30Combined sources3
Turni38 – 40Combined sources3
Helixi41 – 43Combined sources3
Turni45 – 47Combined sources3
Beta strandi55 – 59Combined sources5
Beta strandi61 – 63Combined sources3
Beta strandi66 – 69Combined sources4
Beta strandi76 – 79Combined sources4
Turni80 – 83Combined sources4
Beta strandi91 – 94Combined sources4
Beta strandi97 – 99Combined sources3
Beta strandi101 – 104Combined sources4
Turni105 – 110Combined sources6
Beta strandi111 – 114Combined sources4
Beta strandi117 – 119Combined sources3
Helixi120 – 125Combined sources6
Turni126 – 134Combined sources9
Beta strandi136 – 138Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10G1-144[»]
1NWXX-ray3.50G1-144[»]
1NWYX-ray3.30G1-144[»]
1SM1X-ray3.42G1-144[»]
1XBPX-ray3.50G1-144[»]
2ZJPX-ray3.70F1-144[»]
2ZJQX-ray3.30F1-144[»]
2ZJRX-ray2.91F1-144[»]
3CF5X-ray3.30F1-144[»]
3DLLX-ray3.50F1-144[»]
3PIOX-ray3.25F1-144[»]
3PIPX-ray3.45F1-144[»]
4IO9X-ray3.20F1-144[»]
4IOAX-ray3.20F1-144[»]
4IOCX-ray3.60F1-144[»]
4V49X-ray8.70G1-143[»]
4V4AX-ray9.50G1-143[»]
4V4GX-ray11.50J1-143[»]
5DM6X-ray2.90F4-144[»]
5DM7X-ray3.00F1-144[»]
ProteinModelPortaliQ9RSS7.
SMRiQ9RSS7.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RSS7.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L11P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UIK. Bacteria.
COG0080. LUCA.
HOGENOMiHOG000082123.
InParanoidiQ9RSS7.
KOiK02867.
OMAiCKQFNAK.
OrthoDBiPOG091H00SK.

Family and domain databases

CDDicd00349. Ribosomal_L11. 1 hit.
Gene3Di1.10.10.250. 1 hit.
3.30.1550.10. 1 hit.
HAMAPiMF_00736. Ribosomal_L11. 1 hit.
InterProiIPR000911. Ribosomal_L11/L12.
IPR006519. Ribosomal_L11_bac-typ.
IPR020783. Ribosomal_L11_C.
IPR020785. Ribosomal_L11_CS.
IPR020784. Ribosomal_L11_N.
[Graphical view]
PANTHERiPTHR11661. PTHR11661. 1 hit.
PfamiPF00298. Ribosomal_L11. 1 hit.
PF03946. Ribosomal_L11_N. 1 hit.
[Graphical view]
SMARTiSM00649. RL11. 1 hit.
[Graphical view]
SUPFAMiSSF46906. SSF46906. 1 hit.
SSF54747. SSF54747. 1 hit.
TIGRFAMsiTIGR01632. L11_bact. 1 hit.
PROSITEiPS00359. RIBOSOMAL_L11. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9RSS7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKVAGIVKL QLPAGKATPA PPVGPALGQY GANIMEFTKA FNAQTADKGD
60 70 80 90 100
AIIPVEITIY ADRSFTFITK TPPMSYLIRK AAGIGKGSST PNKAKVGKLN
110 120 130 140
WDQVLEIAKT KMPDLNAGSV EAAANTVAGT ARSMGVTVEG GPNA
Length:144
Mass (Da):14,872
Last modified:May 1, 2000 - v1
Checksum:iF2DA3B99E230D207
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11593.1.
PIRiG75323.
RefSeqiNP_295769.1. NC_001263.1.
WP_010888678.1. NZ_CP015081.1.

Genome annotation databases

EnsemblBacteriaiAAF11593; AAF11593; DR_2046.
GeneIDi1800129.
KEGGidra:DR_2046.
PATRICi21631764. VBIDeiRad64572_2273.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11593.1.
PIRiG75323.
RefSeqiNP_295769.1. NC_001263.1.
WP_010888678.1. NZ_CP015081.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10G1-144[»]
1NWXX-ray3.50G1-144[»]
1NWYX-ray3.30G1-144[»]
1SM1X-ray3.42G1-144[»]
1XBPX-ray3.50G1-144[»]
2ZJPX-ray3.70F1-144[»]
2ZJQX-ray3.30F1-144[»]
2ZJRX-ray2.91F1-144[»]
3CF5X-ray3.30F1-144[»]
3DLLX-ray3.50F1-144[»]
3PIOX-ray3.25F1-144[»]
3PIPX-ray3.45F1-144[»]
4IO9X-ray3.20F1-144[»]
4IOAX-ray3.20F1-144[»]
4IOCX-ray3.60F1-144[»]
4V49X-ray8.70G1-143[»]
4V4AX-ray9.50G1-143[»]
4V4GX-ray11.50J1-143[»]
5DM6X-ray2.90F4-144[»]
5DM7X-ray3.00F1-144[»]
ProteinModelPortaliQ9RSS7.
SMRiQ9RSS7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_2046.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF11593; AAF11593; DR_2046.
GeneIDi1800129.
KEGGidra:DR_2046.
PATRICi21631764. VBIDeiRad64572_2273.

Phylogenomic databases

eggNOGiENOG4108UIK. Bacteria.
COG0080. LUCA.
HOGENOMiHOG000082123.
InParanoidiQ9RSS7.
KOiK02867.
OMAiCKQFNAK.
OrthoDBiPOG091H00SK.

Miscellaneous databases

EvolutionaryTraceiQ9RSS7.

Family and domain databases

CDDicd00349. Ribosomal_L11. 1 hit.
Gene3Di1.10.10.250. 1 hit.
3.30.1550.10. 1 hit.
HAMAPiMF_00736. Ribosomal_L11. 1 hit.
InterProiIPR000911. Ribosomal_L11/L12.
IPR006519. Ribosomal_L11_bac-typ.
IPR020783. Ribosomal_L11_C.
IPR020785. Ribosomal_L11_CS.
IPR020784. Ribosomal_L11_N.
[Graphical view]
PANTHERiPTHR11661. PTHR11661. 1 hit.
PfamiPF00298. Ribosomal_L11. 1 hit.
PF03946. Ribosomal_L11_N. 1 hit.
[Graphical view]
SMARTiSM00649. RL11. 1 hit.
[Graphical view]
SUPFAMiSSF46906. SSF46906. 1 hit.
SSF54747. SSF54747. 1 hit.
TIGRFAMsiTIGR01632. L11_bact. 1 hit.
PROSITEiPS00359. RIBOSOMAL_L11. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL11_DEIRA
AccessioniPrimary (citable) accession number: Q9RSS7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2003
Last sequence update: May 1, 2000
Last modified: November 2, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.