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Protein

50S ribosomal protein L11

Gene

rplK

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.Curated

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L11UniRule annotation
Gene namesi
Name:rplKUniRule annotation
Ordered Locus Names:DR_2046
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001042801 – 14450S ribosomal protein L11Add BLAST144

Post-translational modificationi

One or more lysine residues are methylated.UniRule annotation

Keywords - PTMi

Methylation

Interactioni

Subunit structurei

Part of the ribosomal stalk of the 50S ribosomal subunit. Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex (By similarity). Contacts the CTC protein (RL25).UniRule annotation6 Publications

Protein-protein interaction databases

STRINGi243230.DR_2046

Structurei

Secondary structure

1144
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi6 – 9Combined sources4
Beta strandi14 – 16Combined sources3
Beta strandi20 – 27Combined sources8
Turni28 – 30Combined sources3
Turni38 – 40Combined sources3
Helixi41 – 43Combined sources3
Turni45 – 47Combined sources3
Beta strandi55 – 59Combined sources5
Beta strandi61 – 63Combined sources3
Beta strandi66 – 69Combined sources4
Beta strandi76 – 79Combined sources4
Turni80 – 83Combined sources4
Beta strandi91 – 94Combined sources4
Beta strandi97 – 99Combined sources3
Beta strandi101 – 104Combined sources4
Turni105 – 110Combined sources6
Beta strandi111 – 114Combined sources4
Beta strandi117 – 119Combined sources3
Helixi120 – 125Combined sources6
Turni126 – 134Combined sources9
Beta strandi136 – 138Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10G1-144[»]
1NWXX-ray3.50G1-144[»]
1NWYX-ray3.30G1-144[»]
1SM1X-ray3.42G1-144[»]
1XBPX-ray3.50G1-144[»]
2ZJPX-ray3.70F1-144[»]
2ZJQX-ray3.30F1-144[»]
2ZJRX-ray2.91F1-144[»]
3CF5X-ray3.30F1-144[»]
3DLLX-ray3.50F1-144[»]
3PIOX-ray3.25F1-144[»]
3PIPX-ray3.45F1-144[»]
4IO9X-ray3.20F1-144[»]
4IOAX-ray3.20F1-144[»]
4IOCX-ray3.60F1-144[»]
4V49X-ray8.70G1-143[»]
4V4AX-ray9.50G1-143[»]
4V4GX-ray11.50J1-143[»]
5DM6X-ray2.90F4-144[»]
5DM7X-ray3.00F1-144[»]
5JVGX-ray3.43F1-144[»]
ProteinModelPortaliQ9RSS7
SMRiQ9RSS7
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RSS7

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL11 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UIK Bacteria
COG0080 LUCA
HOGENOMiHOG000082123
InParanoidiQ9RSS7
KOiK02867
OMAiCKQFNAK
OrthoDBiPOG091H00SK

Family and domain databases

CDDicd00349 Ribosomal_L11, 1 hit
Gene3Di1.10.10.250, 1 hit
3.30.1550.10, 1 hit
HAMAPiMF_00736 Ribosomal_L11, 1 hit
InterProiView protein in InterPro
IPR000911 Ribosomal_L11/L12
IPR036796 Ribosomal_L11/L12_N_sf
IPR006519 Ribosomal_L11_bac-typ
IPR020783 Ribosomal_L11_C
IPR036769 Ribosomal_L11_C_sf
IPR020785 Ribosomal_L11_CS
IPR020784 Ribosomal_L11_N
PANTHERiPTHR11661 PTHR11661, 1 hit
PfamiView protein in Pfam
PF00298 Ribosomal_L11, 1 hit
PF03946 Ribosomal_L11_N, 1 hit
SMARTiView protein in SMART
SM00649 RL11, 1 hit
SUPFAMiSSF46906 SSF46906, 1 hit
SSF54747 SSF54747, 1 hit
TIGRFAMsiTIGR01632 L11_bact, 1 hit
PROSITEiView protein in PROSITE
PS00359 RIBOSOMAL_L11, 1 hit

Sequencei

Sequence statusi: Complete.

Q9RSS7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKVAGIVKL QLPAGKATPA PPVGPALGQY GANIMEFTKA FNAQTADKGD
60 70 80 90 100
AIIPVEITIY ADRSFTFITK TPPMSYLIRK AAGIGKGSST PNKAKVGKLN
110 120 130 140
WDQVLEIAKT KMPDLNAGSV EAAANTVAGT ARSMGVTVEG GPNA
Length:144
Mass (Da):14,872
Last modified:May 1, 2000 - v1
Checksum:iF2DA3B99E230D207
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA Translation: AAF11593.1
PIRiG75323
RefSeqiNP_295769.1, NC_001263.1
WP_010888678.1, NZ_CP015081.1

Genome annotation databases

EnsemblBacteriaiAAF11593; AAF11593; DR_2046
GeneIDi1800129
KEGGidra:DR_2046
PATRICifig|243230.17.peg.2273

Similar proteinsi

Entry informationi

Entry nameiRL11_DEIRA
AccessioniPrimary (citable) accession number: Q9RSS7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 28, 2003
Last sequence update: May 1, 2000
Last modified: March 28, 2018
This is version 116 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome
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Main funding by: National Institutes of Health