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Protein

50S ribosomal protein L6

Gene

rplF

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (By similarity). This protein binds to the 23S rRNA, and is important in its secondary structure.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6UniRule annotation
Gene namesi
Name:rplFUniRule annotation
Ordered Locus Names:DR_2111
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001310471 – 18550S ribosomal protein L6Add BLAST185

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation6 Publications

Protein-protein interaction databases

STRINGi243230.DR_2111.

Structurei

Secondary structure

1185
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi16 – 18Combined sources3
Beta strandi25 – 27Combined sources3
Beta strandi33 – 36Combined sources4
Beta strandi39 – 41Combined sources3
Beta strandi43 – 45Combined sources3
Beta strandi47 – 52Combined sources6
Beta strandi57 – 59Combined sources3
Helixi60 – 79Combined sources20
Beta strandi83 – 91Combined sources9
Beta strandi95 – 99Combined sources5
Beta strandi102 – 105Combined sources4
Beta strandi108 – 111Combined sources4
Beta strandi113 – 115Combined sources3
Beta strandi121 – 124Combined sources4
Beta strandi130 – 136Combined sources7
Helixi138 – 150Combined sources13
Turni156 – 158Combined sources3
Beta strandi161 – 164Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10E1-185[»]
1NWXX-ray3.50E1-185[»]
1NWYX-ray3.30E1-185[»]
1SM1X-ray3.42E1-185[»]
1XBPX-ray3.50E1-185[»]
2ZJPX-ray3.70E1-185[»]
2ZJQX-ray3.30E1-185[»]
2ZJRX-ray2.91E1-185[»]
3CF5X-ray3.30E1-185[»]
3DLLX-ray3.50E1-185[»]
3PIOX-ray3.25E1-185[»]
3PIPX-ray3.45E1-185[»]
4IO9X-ray3.20E1-185[»]
4IOAX-ray3.20E1-185[»]
4IOCX-ray3.60E1-185[»]
4U67X-ray3.65E1-185[»]
4V49X-ray8.70E5-181[»]
4V4AX-ray9.50E5-181[»]
4V4GX-ray11.50H5-181[»]
4WFNX-ray3.54E1-185[»]
5DM6X-ray2.90E5-175[»]
5DM7X-ray3.00E5-175[»]
ProteinModelPortaliQ9RSL3.
SMRiQ9RSL3.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RSL3.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L6P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108R5J. Bacteria.
COG0097. LUCA.
HOGENOMiHOG000039903.
InParanoidiQ9RSL3.
KOiK02933.
OMAiTIGYSHP.
OrthoDBiPOG091H029Q.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_B. Ribosomal_L6_B. 1 hit.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSiPR00059. RIBOSOMALL6.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03654. L6_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9RSL3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRIGKQPIA VPSGVTVNAQ DGVFKVKGPK GELTVPYNTE LTVRQDGDQL
60 70 80 90 100
LVERPSDAQK HRALHGLTRT LVANAVKGVS DGYTINLELR GVGFRAKLTG
110 120 130 140 150
KALEMNIGYS HPVIIEPPAG VTFAVPEPTR IDVSGIDKQL VGQVAANVRK
160 170 180
VRKPDAYHGK GVRFVGEQIA LKAGKAGATG GKGKK
Length:185
Mass (Da):19,582
Last modified:March 15, 2004 - v2
Checksum:i00E39D11826B4C1D
GO

Sequence cautioni

The sequence AAF11660 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11660.1. Different initiation.
PIRiB75314.
RefSeqiNP_295834.2. NC_001263.1.
WP_010888742.1. NZ_CP015081.1.

Genome annotation databases

EnsemblBacteriaiAAF11660; AAF11660; DR_2111.
GeneIDi1800121.
KEGGidra:DR_2111.
PATRICi21631898. VBIDeiRad64572_2334.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11660.1. Different initiation.
PIRiB75314.
RefSeqiNP_295834.2. NC_001263.1.
WP_010888742.1. NZ_CP015081.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10E1-185[»]
1NWXX-ray3.50E1-185[»]
1NWYX-ray3.30E1-185[»]
1SM1X-ray3.42E1-185[»]
1XBPX-ray3.50E1-185[»]
2ZJPX-ray3.70E1-185[»]
2ZJQX-ray3.30E1-185[»]
2ZJRX-ray2.91E1-185[»]
3CF5X-ray3.30E1-185[»]
3DLLX-ray3.50E1-185[»]
3PIOX-ray3.25E1-185[»]
3PIPX-ray3.45E1-185[»]
4IO9X-ray3.20E1-185[»]
4IOAX-ray3.20E1-185[»]
4IOCX-ray3.60E1-185[»]
4U67X-ray3.65E1-185[»]
4V49X-ray8.70E5-181[»]
4V4AX-ray9.50E5-181[»]
4V4GX-ray11.50H5-181[»]
4WFNX-ray3.54E1-185[»]
5DM6X-ray2.90E5-175[»]
5DM7X-ray3.00E5-175[»]
ProteinModelPortaliQ9RSL3.
SMRiQ9RSL3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_2111.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF11660; AAF11660; DR_2111.
GeneIDi1800121.
KEGGidra:DR_2111.
PATRICi21631898. VBIDeiRad64572_2334.

Phylogenomic databases

eggNOGiENOG4108R5J. Bacteria.
COG0097. LUCA.
HOGENOMiHOG000039903.
InParanoidiQ9RSL3.
KOiK02933.
OMAiTIGYSHP.
OrthoDBiPOG091H029Q.

Miscellaneous databases

EvolutionaryTraceiQ9RSL3.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_B. Ribosomal_L6_B. 1 hit.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSiPR00059. RIBOSOMALL6.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03654. L6_bact. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL6_DEIRA
AccessioniPrimary (citable) accession number: Q9RSL3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 15, 2004
Last sequence update: March 15, 2004
Last modified: November 2, 2016
This is version 107 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.