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Protein

50S ribosomal protein L6

Gene

rplF

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (By similarity). This protein binds to the 23S rRNA, and is important in its secondary structure.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6UniRule annotation
Gene namesi
Name:rplFUniRule annotation
Ordered Locus Names:DR_2111
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001310471 – 18550S ribosomal protein L6Add BLAST185

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation6 Publications

Protein-protein interaction databases

STRINGi243230.DR_2111

Structurei

Secondary structure

1185
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi16 – 18Combined sources3
Beta strandi25 – 27Combined sources3
Beta strandi33 – 36Combined sources4
Beta strandi39 – 41Combined sources3
Beta strandi43 – 45Combined sources3
Beta strandi47 – 52Combined sources6
Beta strandi57 – 59Combined sources3
Helixi60 – 79Combined sources20
Beta strandi83 – 91Combined sources9
Beta strandi95 – 99Combined sources5
Beta strandi102 – 105Combined sources4
Beta strandi108 – 111Combined sources4
Beta strandi113 – 115Combined sources3
Beta strandi121 – 124Combined sources4
Beta strandi130 – 136Combined sources7
Helixi138 – 150Combined sources13
Turni156 – 158Combined sources3
Beta strandi161 – 164Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10E1-185[»]
1NWXX-ray3.50E1-185[»]
1NWYX-ray3.30E1-185[»]
1SM1X-ray3.42E1-185[»]
1XBPX-ray3.50E1-185[»]
2ZJPX-ray3.70E1-185[»]
2ZJQX-ray3.30E1-185[»]
2ZJRX-ray2.91E1-185[»]
3CF5X-ray3.30E1-185[»]
3DLLX-ray3.50E1-185[»]
3PIOX-ray3.25E1-185[»]
3PIPX-ray3.45E1-185[»]
4IO9X-ray3.20E1-185[»]
4IOAX-ray3.20E1-185[»]
4IOCX-ray3.60E1-185[»]
4U67X-ray3.65E1-185[»]
4V49X-ray8.70E5-181[»]
4V4AX-ray9.50E5-181[»]
4V4GX-ray11.50H5-181[»]
4WFNX-ray3.54E1-185[»]
5DM6X-ray2.90E5-175[»]
5DM7X-ray3.00E5-175[»]
5JVGX-ray3.43E1-185[»]
5JVHX-ray3.58E1-185[»]
ProteinModelPortaliQ9RSL3
SMRiQ9RSL3
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RSL3

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL6 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108R5J Bacteria
COG0097 LUCA
HOGENOMiHOG000039903
InParanoidiQ9RSL3
KOiK02933
OMAiINNMVVG
OrthoDBiPOG091H029Q

Family and domain databases

Gene3Di3.90.930.12, 2 hits
HAMAPiMF_01365_B Ribosomal_L6_B, 1 hit
InterProiView protein in InterPro
IPR000702 Ribosomal_L6
IPR020040 Ribosomal_L6_a/b-dom
IPR036789 Ribosomal_L6_a/b-dom_sf
IPR019906 Ribosomal_L6_bac-type
PANTHERiPTHR11655 PTHR11655, 1 hit
PTHR11655:SF14 PTHR11655:SF14, 1 hit
PfamiView protein in Pfam
PF00347 Ribosomal_L6, 2 hits
PIRSFiPIRSF002162 Ribosomal_L6, 1 hit
PRINTSiPR00059 RIBOSOMALL6
SUPFAMiSSF56053 SSF56053, 2 hits
TIGRFAMsiTIGR03654 L6_bact, 1 hit

Sequencei

Sequence statusi: Complete.

Q9RSL3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRIGKQPIA VPSGVTVNAQ DGVFKVKGPK GELTVPYNTE LTVRQDGDQL
60 70 80 90 100
LVERPSDAQK HRALHGLTRT LVANAVKGVS DGYTINLELR GVGFRAKLTG
110 120 130 140 150
KALEMNIGYS HPVIIEPPAG VTFAVPEPTR IDVSGIDKQL VGQVAANVRK
160 170 180
VRKPDAYHGK GVRFVGEQIA LKAGKAGATG GKGKK
Length:185
Mass (Da):19,582
Last modified:March 15, 2004 - v2
Checksum:i00E39D11826B4C1D
GO

Sequence cautioni

The sequence AAF11660 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA Translation: AAF11660.1 Different initiation.
PIRiB75314
RefSeqiNP_295834.2, NC_001263.1
WP_010888742.1, NZ_CP015081.1

Genome annotation databases

EnsemblBacteriaiAAF11660; AAF11660; DR_2111
GeneIDi1800121
KEGGidra:DR_2111
PATRICifig|243230.17.peg.2334

Similar proteinsi

Entry informationi

Entry nameiRL6_DEIRA
AccessioniPrimary (citable) accession number: Q9RSL3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 15, 2004
Last sequence update: March 15, 2004
Last modified: March 28, 2018
This is version 114 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

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