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Protein

50S ribosomal protein L30

Gene

rpmD

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds the 5S and 23S rRNAs.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L30UniRule annotation
Gene namesi
Name:rpmDUniRule annotation
Ordered Locus Names:DR_2114
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001045891 – 5550S ribosomal protein L30Add BLAST55

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation6 Publications

Protein-protein interaction databases

STRINGi243230.DR_2114.

Structurei

Secondary structure

155
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 5Combined sources4
Helixi14 – 22Combined sources9
Beta strandi31 – 33Combined sources3
Turni38 – 40Combined sources3
Helixi41 – 46Combined sources6
Helixi48 – 50Combined sources3
Beta strandi51 – 53Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10X1-55[»]
1NWXX-ray3.50X1-55[»]
1NWYX-ray3.30X1-55[»]
1SM1X-ray3.42X1-55[»]
1XBPX-ray3.50X1-55[»]
2ZJPX-ray3.70W1-55[»]
2ZJQX-ray3.30W1-55[»]
2ZJRX-ray2.91W1-55[»]
3CF5X-ray3.30W1-55[»]
3DLLX-ray3.50W1-55[»]
3PIOX-ray3.25W1-55[»]
3PIPX-ray3.45W1-55[»]
4IO9X-ray3.20W1-55[»]
4IOAX-ray3.20W1-55[»]
4IOCX-ray3.60W1-55[»]
4U67X-ray3.65W1-55[»]
4V49X-ray8.70X1-55[»]
4V4AX-ray9.50X1-55[»]
4V4GX-ray11.50Z1-55[»]
4WFNX-ray3.54W1-55[»]
5DM6X-ray2.90W1-55[»]
5DM7X-ray3.00W1-55[»]
ProteinModelPortaliQ9RSL0.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RSL0.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L30P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG410856V. Bacteria.
COG1841. LUCA.
HOGENOMiHOG000039916.
InParanoidiQ9RSL0.
KOiK02907.
OMAiREVNDTP.
OrthoDBiPOG091H00O0.

Family and domain databases

CDDicd01658. Ribosomal_L30. 1 hit.
Gene3Di3.30.1390.20. 1 hit.
HAMAPiMF_01371_B. Ribosomal_L30_B. 1 hit.
InterProiIPR005996. Ribosomal_L30_bac-type.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9RSL0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIKLVRSVI GRPGNQVKTV QALGLRKIGD SREVSDTPAV RGMVKTVKHL

LEVQE
Length:55
Mass (Da):6,067
Last modified:May 1, 2000 - v1
Checksum:iF3592EF664026A56
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11663.1.
PIRiE75314.
RefSeqiNP_295837.1. NC_001263.1.
WP_010888745.1. NZ_CP015081.1.

Genome annotation databases

EnsemblBacteriaiAAF11663; AAF11663; DR_2114.
GeneIDi1797285.
KEGGidra:DR_2114.
PATRICi21631904. VBIDeiRad64572_2337.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11663.1.
PIRiE75314.
RefSeqiNP_295837.1. NC_001263.1.
WP_010888745.1. NZ_CP015081.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.10X1-55[»]
1NWXX-ray3.50X1-55[»]
1NWYX-ray3.30X1-55[»]
1SM1X-ray3.42X1-55[»]
1XBPX-ray3.50X1-55[»]
2ZJPX-ray3.70W1-55[»]
2ZJQX-ray3.30W1-55[»]
2ZJRX-ray2.91W1-55[»]
3CF5X-ray3.30W1-55[»]
3DLLX-ray3.50W1-55[»]
3PIOX-ray3.25W1-55[»]
3PIPX-ray3.45W1-55[»]
4IO9X-ray3.20W1-55[»]
4IOAX-ray3.20W1-55[»]
4IOCX-ray3.60W1-55[»]
4U67X-ray3.65W1-55[»]
4V49X-ray8.70X1-55[»]
4V4AX-ray9.50X1-55[»]
4V4GX-ray11.50Z1-55[»]
4WFNX-ray3.54W1-55[»]
5DM6X-ray2.90W1-55[»]
5DM7X-ray3.00W1-55[»]
ProteinModelPortaliQ9RSL0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_2114.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF11663; AAF11663; DR_2114.
GeneIDi1797285.
KEGGidra:DR_2114.
PATRICi21631904. VBIDeiRad64572_2337.

Phylogenomic databases

eggNOGiENOG410856V. Bacteria.
COG1841. LUCA.
HOGENOMiHOG000039916.
InParanoidiQ9RSL0.
KOiK02907.
OMAiREVNDTP.
OrthoDBiPOG091H00O0.

Miscellaneous databases

EvolutionaryTraceiQ9RSL0.

Family and domain databases

CDDicd01658. Ribosomal_L30. 1 hit.
Gene3Di3.30.1390.20. 1 hit.
HAMAPiMF_01371_B. Ribosomal_L30_B. 1 hit.
InterProiIPR005996. Ribosomal_L30_bac-type.
IPR016082. Ribosomal_L30_ferredoxin-like.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
[Graphical view]
PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRL30_DEIRA
AccessioniPrimary (citable) accession number: Q9RSL0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 15, 2004
Last sequence update: May 1, 2000
Last modified: November 2, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.