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Protein

50S ribosomal protein L15

Gene

rplO

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds to the 23S rRNA.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L15
Gene namesi
Name:rplO
Ordered Locus Names:DR_2115
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001047161 – 15650S ribosomal protein L15Add BLAST156

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts proteins L4, L21 and L35.6 Publications

Protein-protein interaction databases

STRINGi243230.DR_2115.

Structurei

Secondary structure

1156
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni12 – 14Combined sources3
Beta strandi19 – 21Combined sources3
Beta strandi23 – 26Combined sources4
Beta strandi30 – 32Combined sources3
Beta strandi34 – 36Combined sources3
Turni37 – 39Combined sources3
Beta strandi44 – 46Combined sources3
Beta strandi51 – 53Combined sources3
Helixi56 – 59Combined sources4
Beta strandi73 – 76Combined sources4
Helixi77 – 80Combined sources4
Turni82 – 84Combined sources3
Helixi92 – 97Combined sources6
Beta strandi102 – 104Combined sources3
Beta strandi106 – 109Combined sources4
Beta strandi118 – 120Combined sources3
Beta strandi123 – 125Combined sources3
Helixi127 – 134Combined sources8
Turni135 – 137Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1GS2model-J68-145[»]
1NKWX-ray3.10J1-156[»]
1NWXX-ray3.50J1-156[»]
1NWYX-ray3.30J1-156[»]
1SM1X-ray3.42J1-156[»]
1XBPX-ray3.50J1-156[»]
2ZJPX-ray3.70I1-156[»]
2ZJQX-ray3.30I1-156[»]
2ZJRX-ray2.91I1-156[»]
3CF5X-ray3.30I1-156[»]
3DLLX-ray3.50I1-156[»]
3PIOX-ray3.25I1-156[»]
3PIPX-ray3.45I1-156[»]
4IO9X-ray3.20I1-156[»]
4IOAX-ray3.20I1-156[»]
4IOCX-ray3.60I1-156[»]
4U67X-ray3.65I1-156[»]
4V49X-ray8.70J4-144[»]
4V4AX-ray9.50J4-144[»]
4V4GX-ray11.50M4-144[»]
4WFNX-ray3.54I1-156[»]
5DM6X-ray2.90I4-144[»]
5DM7X-ray3.00I4-144[»]
ProteinModelPortaliQ9RSK9.
SMRiQ9RSK9.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RSK9.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L15P family.Curated

Phylogenomic databases

eggNOGiENOG4108UZ0. Bacteria.
COG0200. LUCA.
HOGENOMiHOG000231262.
InParanoidiQ9RSK9.
KOiK02876.
OMAiRGHKGLK.
OrthoDBiPOG091H008Q.

Family and domain databases

HAMAPiMF_01341. Ribosomal_L15. 1 hit.
InterProiIPR030878. Ribosomal_L15.
IPR005749. Ribosomal_L15_bac-type.
IPR001196. Ribosomal_L15_CS.
IPR021131. Ribosomal_L18e/L15P.
[Graphical view]
PANTHERiPTHR12934. PTHR12934. 1 hit.
PfamiPF00828. Ribosomal_L27A. 1 hit.
[Graphical view]
SUPFAMiSSF52080. SSF52080. 1 hit.
TIGRFAMsiTIGR01071. rplO_bact. 1 hit.
PROSITEiPS00475. RIBOSOMAL_L15. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9RSK9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLHDLKPTP GSRKDRKRVG RGPGGTDKTA GRGHKGQKSR SGAGKGAFFE
60 70 80 90 100
GGRSRLIARL PKRGFNNVGT TYEVVKLSQL QDLEDTTFDR DTLEAYRLVR
110 120 130 140 150
RKNRPVKLLA SGEISRAVTV HVDAASAAAI KAVEAAGGRV VLPEVQTQQD

DAQKAE
Length:156
Mass (Da):16,860
Last modified:May 1, 2000 - v1
Checksum:i04D58FA897437A33
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11664.1.
PIRiF75314.
RefSeqiNP_295838.1. NC_001263.1.
WP_010888746.1. NZ_CP015081.1.

Genome annotation databases

EnsemblBacteriaiAAF11664; AAF11664; DR_2115.
GeneIDi1797297.
KEGGidra:DR_2115.
PATRICi21631906. VBIDeiRad64572_2338.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11664.1.
PIRiF75314.
RefSeqiNP_295838.1. NC_001263.1.
WP_010888746.1. NZ_CP015081.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1GS2model-J68-145[»]
1NKWX-ray3.10J1-156[»]
1NWXX-ray3.50J1-156[»]
1NWYX-ray3.30J1-156[»]
1SM1X-ray3.42J1-156[»]
1XBPX-ray3.50J1-156[»]
2ZJPX-ray3.70I1-156[»]
2ZJQX-ray3.30I1-156[»]
2ZJRX-ray2.91I1-156[»]
3CF5X-ray3.30I1-156[»]
3DLLX-ray3.50I1-156[»]
3PIOX-ray3.25I1-156[»]
3PIPX-ray3.45I1-156[»]
4IO9X-ray3.20I1-156[»]
4IOAX-ray3.20I1-156[»]
4IOCX-ray3.60I1-156[»]
4U67X-ray3.65I1-156[»]
4V49X-ray8.70J4-144[»]
4V4AX-ray9.50J4-144[»]
4V4GX-ray11.50M4-144[»]
4WFNX-ray3.54I1-156[»]
5DM6X-ray2.90I4-144[»]
5DM7X-ray3.00I4-144[»]
ProteinModelPortaliQ9RSK9.
SMRiQ9RSK9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_2115.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF11664; AAF11664; DR_2115.
GeneIDi1797297.
KEGGidra:DR_2115.
PATRICi21631906. VBIDeiRad64572_2338.

Phylogenomic databases

eggNOGiENOG4108UZ0. Bacteria.
COG0200. LUCA.
HOGENOMiHOG000231262.
InParanoidiQ9RSK9.
KOiK02876.
OMAiRGHKGLK.
OrthoDBiPOG091H008Q.

Miscellaneous databases

EvolutionaryTraceiQ9RSK9.

Family and domain databases

HAMAPiMF_01341. Ribosomal_L15. 1 hit.
InterProiIPR030878. Ribosomal_L15.
IPR005749. Ribosomal_L15_bac-type.
IPR001196. Ribosomal_L15_CS.
IPR021131. Ribosomal_L18e/L15P.
[Graphical view]
PANTHERiPTHR12934. PTHR12934. 1 hit.
PfamiPF00828. Ribosomal_L27A. 1 hit.
[Graphical view]
SUPFAMiSSF52080. SSF52080. 1 hit.
TIGRFAMsiTIGR01071. rplO_bact. 1 hit.
PROSITEiPS00475. RIBOSOMAL_L15. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL15_DEIRA
AccessioniPrimary (citable) accession number: Q9RSK9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 15, 2004
Last sequence update: May 1, 2000
Last modified: November 2, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.