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Protein

50S ribosomal protein L36

Gene

rpmJ

Organism
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds the 23S rRNA.

Cofactori

Zn2+By similarityCuratedNote: Binds 1 zinc ion per subunit.By similarityCurated

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi11ZincBy similarityCurated1
Metal bindingi14ZincBy similarityCurated1
Metal bindingi27ZincBy similarityCurated1
Metal bindingi32ZincBy similarityCurated1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, RNA-binding, rRNA-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L36
Gene namesi
Name:rpmJ
Ordered Locus Names:DR_2124
OrganismiDeinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
Taxonomic identifieri243230 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
Proteomesi
  • UP000002524 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001261801 – 3750S ribosomal protein L36Add BLAST37

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.6 Publications

Protein-protein interaction databases

STRINGi243230.DR_2124.

Structurei

Secondary structure

137
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi11 – 13Combined sources3
Beta strandi15 – 18Combined sources4
Beta strandi20 – 22Combined sources3
Beta strandi23 – 25Combined sources3
Beta strandi28 – 30Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.1041-36[»]
1NWXX-ray3.5041-37[»]
1NWYX-ray3.3041-37[»]
1SM1X-ray3.4241-37[»]
1XBPX-ray3.5041-37[»]
2ZJPX-ray3.7041-37[»]
2ZJQX-ray3.3041-37[»]
2ZJRX-ray2.9141-37[»]
3CF5X-ray3.3041-37[»]
3DLLX-ray3.5041-37[»]
3PIOX-ray3.2541-37[»]
3PIPX-ray3.4541-37[»]
4IO9X-ray3.2041-37[»]
4IOAX-ray3.2041-37[»]
4IOCX-ray3.6041-37[»]
4V49X-ray8.7042-36[»]
4V4AX-ray9.5042-36[»]
4V4GX-ray11.5062-36[»]
4V4TX-ray6.4691-36[»]
ProteinModelPortaliQ9RSK0.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9RSK0.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L36P family.Curated

Phylogenomic databases

eggNOGiENOG41067V7. Bacteria.
COG0257. LUCA.
HOGENOMiHOG000111584.
InParanoidiQ9RSK0.
KOiK02919.
OrthoDBiPOG091H05R8.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36. 1 hit.
InterProiIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERiPTHR18804. PTHR18804. 1 hit.
PfamiPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9RSK0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30 
MKVRSSVKKM CDNCKVVRRH GRVLVICSNV KHKQRQG
Length:37
Mass (Da):4,309
Last modified:May 1, 2000 - v1
Checksum:iB13477853DD772ED
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11674.1.
PIRiE75312.
RefSeqiNP_295847.1. NC_001263.1.
WP_010888755.1. NZ_CP015081.1.

Genome annotation databases

EnsemblBacteriaiAAF11674; AAF11674; DR_2124.
GeneIDi1799730.
KEGGidra:DR_2124.
PATRICi21631924. VBIDeiRad64572_2347.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000513 Genomic DNA. Translation: AAF11674.1.
PIRiE75312.
RefSeqiNP_295847.1. NC_001263.1.
WP_010888755.1. NZ_CP015081.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NKWX-ray3.1041-36[»]
1NWXX-ray3.5041-37[»]
1NWYX-ray3.3041-37[»]
1SM1X-ray3.4241-37[»]
1XBPX-ray3.5041-37[»]
2ZJPX-ray3.7041-37[»]
2ZJQX-ray3.3041-37[»]
2ZJRX-ray2.9141-37[»]
3CF5X-ray3.3041-37[»]
3DLLX-ray3.5041-37[»]
3PIOX-ray3.2541-37[»]
3PIPX-ray3.4541-37[»]
4IO9X-ray3.2041-37[»]
4IOAX-ray3.2041-37[»]
4IOCX-ray3.6041-37[»]
4V49X-ray8.7042-36[»]
4V4AX-ray9.5042-36[»]
4V4GX-ray11.5062-36[»]
4V4TX-ray6.4691-36[»]
ProteinModelPortaliQ9RSK0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243230.DR_2124.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAF11674; AAF11674; DR_2124.
GeneIDi1799730.
KEGGidra:DR_2124.
PATRICi21631924. VBIDeiRad64572_2347.

Phylogenomic databases

eggNOGiENOG41067V7. Bacteria.
COG0257. LUCA.
HOGENOMiHOG000111584.
InParanoidiQ9RSK0.
KOiK02919.
OrthoDBiPOG091H05R8.

Miscellaneous databases

EvolutionaryTraceiQ9RSK0.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36. 1 hit.
InterProiIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERiPTHR18804. PTHR18804. 1 hit.
PfamiPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL36_DEIRA
AccessioniPrimary (citable) accession number: Q9RSK0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 1, 2000
Last modified: November 2, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.